miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 5' -49.2 NC_001973.1 + 160622 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160542 0.68 0.991198
Target:  5'- --cUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160464 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160387 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 151347 0.67 0.995841
Target:  5'- aGAUUcGAgCUcgGCgGACGCGUAGGAUc -3'
miRNA:   3'- -CUAA-CUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 151062 0.67 0.993392
Target:  5'- ---aGACUCgagcucgGCgGACGCGUAGGAUc -3'
miRNA:   3'- cuaaCUGGGaa-----CGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 150953 0.68 0.989903
Target:  5'- ---aGACUCgagcucgGCgGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUGGGaa-----CGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 150900 0.74 0.858915
Target:  5'- ---cGAgCUcgGCCGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 143840 0.66 0.997017
Target:  5'- aGGUUGAUCgaauugGCCGACGCGgGAAc- -3'
miRNA:   3'- -CUAACUGGgaa---CGGCUGCGCaUUUua -5'
8052 5' -49.2 NC_001973.1 + 130953 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 130541 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 129227 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 128290 0.66 0.997017
Target:  5'- uGAUUGGCCuCUUgaagcGCCGACGCc------ -3'
miRNA:   3'- -CUAACUGG-GAA-----CGGCUGCGcauuuua -5'
8052 5' -49.2 NC_001973.1 + 127512 0.66 0.998255
Target:  5'- --cUGAgCUcgGCgGGCGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 127435 0.66 0.998255
Target:  5'- ---cGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 127356 0.68 0.991198
Target:  5'- --cUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 126088 0.8 0.576618
Target:  5'- aGUUGAgCCCgagagcgUGCCGACGCGUGAGc- -3'
miRNA:   3'- cUAACU-GGGa------ACGGCUGCGCAUUUua -5'
8052 5' -49.2 NC_001973.1 + 126046 0.78 0.652146
Target:  5'- -uUUGAgCUcUGCCGACGCGUAAGAc -3'
miRNA:   3'- cuAACUgGGaACGGCUGCGCAUUUUa -5'
8052 5' -49.2 NC_001973.1 + 124508 0.67 0.996469
Target:  5'- ---cGGCgCUgGCCGACGCGUucAAUc -3'
miRNA:   3'- cuaaCUGgGAaCGGCUGCGCAuuUUA- -5'
8052 5' -49.2 NC_001973.1 + 124275 0.66 0.997017
Target:  5'- ---gGGCCCgucgGCCGACGCu------ -3'
miRNA:   3'- cuaaCUGGGaa--CGGCUGCGcauuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.