miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8053 5' -55 NC_001973.1 + 56390 0.65 0.957955
Target:  5'- aGGCUCGGuaucggGCUCGAagccGAgCUCGGUAu -3'
miRNA:   3'- -CCGAGCU------UGAGCUaa--CUgGGGCCGUc -5'
8053 5' -55 NC_001973.1 + 145984 0.66 0.954158
Target:  5'- gGGCUCGAagcaucgagccgGCUCGGggagcgGGuCCgCCGGCu- -3'
miRNA:   3'- -CCGAGCU------------UGAGCUaa----CU-GG-GGCCGuc -5'
8053 5' -55 NC_001973.1 + 21545 0.66 0.954158
Target:  5'- cGGCgUCGGGCgCGccgUGGUCCCGGCGc -3'
miRNA:   3'- -CCG-AGCUUGaGCua-ACUGGGGCCGUc -5'
8053 5' -55 NC_001973.1 + 54381 0.66 0.954158
Target:  5'- uGGCguagCGAGCg-----GGCaCCCGGCGGa -3'
miRNA:   3'- -CCGa---GCUUGagcuaaCUG-GGGCCGUC- -5'
8053 5' -55 NC_001973.1 + 127587 0.66 0.941402
Target:  5'- aGCUCGAGCUCGGcgGucGCCUagauaaaGGUAGu -3'
miRNA:   3'- cCGAGCUUGAGCUaaC--UGGGg------CCGUC- -5'
8053 5' -55 NC_001973.1 + 38570 0.66 0.941402
Target:  5'- aGCUCGAagcGCaCGAUUcGCCgCCGGCGc -3'
miRNA:   3'- cCGAGCU---UGaGCUAAcUGG-GGCCGUc -5'
8053 5' -55 NC_001973.1 + 109033 0.66 0.936686
Target:  5'- cGGCUCGuccaccucguCUCGGUUGucggGCCgCGGguGc -3'
miRNA:   3'- -CCGAGCuu--------GAGCUAAC----UGGgGCCguC- -5'
8053 5' -55 NC_001973.1 + 16435 0.67 0.92865
Target:  5'- cGCUCGAGCUCGGcgGACgCguaagauuuuacgugCCGGcCGGg -3'
miRNA:   3'- cCGAGCUUGAGCUaaCUG-G---------------GGCC-GUC- -5'
8053 5' -55 NC_001973.1 + 20517 0.67 0.926547
Target:  5'- aGGuCUUGAAC-CGuUUGGCCgCUGGCAu -3'
miRNA:   3'- -CC-GAGCUUGaGCuAACUGG-GGCCGUc -5'
8053 5' -55 NC_001973.1 + 90568 0.67 0.921123
Target:  5'- cGGCUCGAGCacaacagaguuuUCGAUUG-CCaauugGGCGGc -3'
miRNA:   3'- -CCGAGCUUG------------AGCUAACuGGgg---CCGUC- -5'
8053 5' -55 NC_001973.1 + 119212 0.67 0.921123
Target:  5'- cGGCUCGcccuGCgUCGAggucGACgCCGaGCAGg -3'
miRNA:   3'- -CCGAGCu---UG-AGCUaa--CUGgGGC-CGUC- -5'
8053 5' -55 NC_001973.1 + 70079 0.67 0.917755
Target:  5'- cGGCagggCGGGCUCGAUguUGugcgcgagcgcgaacGCCUCGGCGc -3'
miRNA:   3'- -CCGa---GCUUGAGCUA--AC---------------UGGGGCCGUc -5'
8053 5' -55 NC_001973.1 + 34455 0.67 0.915463
Target:  5'- -uCUCGGACUCGAUgaUGGCgUUGGUGGu -3'
miRNA:   3'- ccGAGCUUGAGCUA--ACUGgGGCCGUC- -5'
8053 5' -55 NC_001973.1 + 18324 0.67 0.915463
Target:  5'- aGCUCGcuCUUGGUcggaUGGCCgCCGGcCAGc -3'
miRNA:   3'- cCGAGCuuGAGCUA----ACUGG-GGCC-GUC- -5'
8053 5' -55 NC_001973.1 + 67384 0.67 0.909568
Target:  5'- aGUUUGAGCUgaaCG-UUGGgCCCGGCGGu -3'
miRNA:   3'- cCGAGCUUGA---GCuAACUgGGGCCGUC- -5'
8053 5' -55 NC_001973.1 + 22761 0.68 0.902814
Target:  5'- gGGggCGAGCUCGAcaucGACCUggucgggCGGCAGu -3'
miRNA:   3'- -CCgaGCUUGAGCUaa--CUGGG-------GCCGUC- -5'
8053 5' -55 NC_001973.1 + 114952 0.68 0.890493
Target:  5'- cGGCUUGAACUCuGUUaACCCCuGCc- -3'
miRNA:   3'- -CCGAGCUUGAGcUAAcUGGGGcCGuc -5'
8053 5' -55 NC_001973.1 + 146081 0.68 0.887795
Target:  5'- cGGCUCGGGCgggCGGggacuaaggucgGGCCgCGGCGc -3'
miRNA:   3'- -CCGAGCUUGa--GCUaa----------CUGGgGCCGUc -5'
8053 5' -55 NC_001973.1 + 40890 0.68 0.872325
Target:  5'- aGGCaugaucucaucugauUUGAACUCGA-UGACCCuagcCGGCAc -3'
miRNA:   3'- -CCG---------------AGCUUGAGCUaACUGGG----GCCGUc -5'
8053 5' -55 NC_001973.1 + 55812 0.69 0.854277
Target:  5'- cGGCUCGAACggCGAcagaGGCCugcggaCCGGCGa -3'
miRNA:   3'- -CCGAGCUUGa-GCUaa--CUGG------GGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.