miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8056 3' -54.9 NC_001973.1 + 95835 0.66 0.948262
Target:  5'- gGGCGCgGCgacgggcccGGUGCcgGGCACGugGGa -3'
miRNA:   3'- gCUGCGaCGa--------CCACG--UUGUGCugCUc -5'
8056 3' -54.9 NC_001973.1 + 83941 0.66 0.948262
Target:  5'- aCGGCGCgccGCUcGGagGCGgGCGCGuCGAGg -3'
miRNA:   3'- -GCUGCGa--CGA-CCa-CGU-UGUGCuGCUC- -5'
8056 3' -54.9 NC_001973.1 + 63815 0.66 0.947834
Target:  5'- cCGACGCgGcCUGG-GCAACGagugcgcguucgcCGGCGAc -3'
miRNA:   3'- -GCUGCGaC-GACCaCGUUGU-------------GCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 31210 0.66 0.943879
Target:  5'- aCGACGCaGCgcgGGUugaaCGACACGggcGCGAGc -3'
miRNA:   3'- -GCUGCGaCGa--CCAc---GUUGUGC---UGCUC- -5'
8056 3' -54.9 NC_001973.1 + 143094 0.66 0.943879
Target:  5'- aGACGUcgcagUGCUucUGCGGCGCGgACGAGc -3'
miRNA:   3'- gCUGCG-----ACGAccACGUUGUGC-UGCUC- -5'
8056 3' -54.9 NC_001973.1 + 90402 0.66 0.94206
Target:  5'- gCGGCGCgaacugcgaaacgGCgGuGUGCAGCGCGuGCGAc -3'
miRNA:   3'- -GCUGCGa------------CGaC-CACGUUGUGC-UGCUc -5'
8056 3' -54.9 NC_001973.1 + 108282 0.66 0.941137
Target:  5'- cCGGCGUuuuuuuugcgauuuuUGCcaGGUGCucUGCGACGAGa -3'
miRNA:   3'- -GCUGCG---------------ACGa-CCACGuuGUGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 53701 0.66 0.939261
Target:  5'- uCGGCGCcgagGCUGaccGUGUAgacgaGCACGAUGAa -3'
miRNA:   3'- -GCUGCGa---CGAC---CACGU-----UGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 123515 0.66 0.934405
Target:  5'- aCGGCGCgcucgccgGCgcaGUGCAGCGCGugaACGAa -3'
miRNA:   3'- -GCUGCGa-------CGac-CACGUUGUGC---UGCUc -5'
8056 3' -54.9 NC_001973.1 + 124254 0.66 0.934405
Target:  5'- -aGCGCUGCU-GUGCAugGaCGugGGc -3'
miRNA:   3'- gcUGCGACGAcCACGUugU-GCugCUc -5'
8056 3' -54.9 NC_001973.1 + 131270 0.67 0.92931
Target:  5'- gCGAguCGCguccguggGCUGuUGCAACAUGACGuGg -3'
miRNA:   3'- -GCU--GCGa-------CGACcACGUUGUGCUGCuC- -5'
8056 3' -54.9 NC_001973.1 + 59126 0.67 0.92931
Target:  5'- uCGugGCcaaGUUGGcGCGcauACGCGACGAu -3'
miRNA:   3'- -GCugCGa--CGACCaCGU---UGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 95085 0.67 0.923976
Target:  5'- aGGCGCUGCagcgcucGUGCGcgggcCGCGACGAc -3'
miRNA:   3'- gCUGCGACGac-----CACGUu----GUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 65951 0.67 0.923976
Target:  5'- gGACagGCUGgUGGUcgcGCGcCACGACGAc -3'
miRNA:   3'- gCUG--CGACgACCA---CGUuGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 24168 0.67 0.918402
Target:  5'- uGGCGCUGCcGcUGCGGcCGCGGCGc- -3'
miRNA:   3'- gCUGCGACGaCcACGUU-GUGCUGCuc -5'
8056 3' -54.9 NC_001973.1 + 14353 0.67 0.91259
Target:  5'- uGGCGUggucgGCgUGGUcgacGgGGCGCGGCGAGg -3'
miRNA:   3'- gCUGCGa----CG-ACCA----CgUUGUGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 25064 0.67 0.911399
Target:  5'- uCGACGCguucgcgcgccaGCUcaucaccgaccGGUGCAGCACGcucauCGAGa -3'
miRNA:   3'- -GCUGCGa-----------CGA-----------CCACGUUGUGCu----GCUC- -5'
8056 3' -54.9 NC_001973.1 + 99974 0.68 0.886993
Target:  5'- uGGCGCgcgGCUGcagGUAACGCGACa-- -3'
miRNA:   3'- gCUGCGa--CGACca-CGUUGUGCUGcuc -5'
8056 3' -54.9 NC_001973.1 + 32846 0.68 0.886993
Target:  5'- uGACGCUGCucuUGGUuuuGUuuCGuCGACGGGg -3'
miRNA:   3'- gCUGCGACG---ACCA---CGuuGU-GCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 7734 0.68 0.886993
Target:  5'- uGACGCUGgagcaccGGUGCGGCGCGaaccGCGGc -3'
miRNA:   3'- gCUGCGACga-----CCACGUUGUGC----UGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.