Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8057 | 3' | -60.9 | NC_001973.1 | + | 86972 | 0.67 | 0.639119 |
Target: 5'- gUCCgccccgcccgCGGCGCCgUCCGCC-CCGc -3' miRNA: 3'- gAGGaacaa-----GCCGCGG-AGGCGGcGGC- -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 41863 | 0.67 | 0.684123 |
Target: 5'- aUCCgag-UCGcGUGCCUCacguuCGCCGCCu -3' miRNA: 3'- gAGGaacaAGC-CGCGGAG-----GCGGCGGc -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 84293 | 0.66 | 0.693821 |
Target: 5'- -aCCUcGaaCGGCGCacggccgcgUCCGCCGCCc -3' miRNA: 3'- gaGGAaCaaGCCGCGg--------AGGCGGCGGc -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 29138 | 0.66 | 0.693821 |
Target: 5'- gUCCaca--CGaGaGCCUCCGCCGCCGc -3' miRNA: 3'- gAGGaacaaGC-CgCGGAGGCGGCGGC- -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 24155 | 0.66 | 0.703471 |
Target: 5'- -cCCgcc-UCGGCGCUggcgCUGCCGCUGc -3' miRNA: 3'- gaGGaacaAGCCGCGGa---GGCGGCGGC- -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 113655 | 0.66 | 0.707317 |
Target: 5'- aCUgC-UGUUUGGCGUUcaacagcaucgacgCCGCCGCCGc -3' miRNA: 3'- -GAgGaACAAGCCGCGGa-------------GGCGGCGGC- -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 27837 | 0.66 | 0.722599 |
Target: 5'- cCUCUugcggcccggUUGgcCGGCGCUggcggCCGCgGCCGc -3' miRNA: 3'- -GAGG----------AACaaGCCGCGGa----GGCGgCGGC- -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 32780 | 0.66 | 0.732059 |
Target: 5'- uCUCCUcGUgCGacuuuuCGCCgCCGCCGCCu -3' miRNA: 3'- -GAGGAaCAaGCc-----GCGGaGGCGGCGGc -5' |
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8057 | 3' | -60.9 | NC_001973.1 | + | 23672 | 0.66 | 0.750733 |
Target: 5'- aUCggUGcUCGcGgGCCUCCGCgCGUCGa -3' miRNA: 3'- gAGgaACaAGC-CgCGGAGGCG-GCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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