miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8057 5' -57.2 NC_001973.1 + 157898 0.66 0.847784
Target:  5'- aGGUCGCGGcCG-CCGcGCcCGCGAGCg -3'
miRNA:   3'- -UCGGCGUCaGCaGGUcCGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 151384 0.76 0.35191
Target:  5'- cGGCCGgGGUCGUCUgAGGUuagaauaACGCGGGCg -3'
miRNA:   3'- -UCGGCgUCAGCAGG-UCCG-------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 146578 0.66 0.855607
Target:  5'- cAGCUgGCAGgugcgaugCGUCagCAGGCACACGcuGCu -3'
miRNA:   3'- -UCGG-CGUCa-------GCAG--GUCCGUGUGCu-UG- -5'
8057 5' -57.2 NC_001973.1 + 146507 0.68 0.773302
Target:  5'- uGGcCCGCGGgaUCGUCgggCAgcagagggucgaacuGGCACACGGACa -3'
miRNA:   3'- -UC-GGCGUC--AGCAG---GU---------------CCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 145424 0.67 0.813764
Target:  5'- gGGCCGCGGcUCGUuuggauaUCGGGCGucgcCAgGGACa -3'
miRNA:   3'- -UCGGCGUC-AGCA-------GGUCCGU----GUgCUUG- -5'
8057 5' -57.2 NC_001973.1 + 143804 0.66 0.839767
Target:  5'- gAGCuCGauaGGUCGUCCcuGUaguugaACACGAACa -3'
miRNA:   3'- -UCG-GCg--UCAGCAGGucCG------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 143487 0.66 0.847784
Target:  5'- cGGuCCGCGgcGUCGUCgAGGguCACGcuCa -3'
miRNA:   3'- -UC-GGCGU--CAGCAGgUCCguGUGCuuG- -5'
8057 5' -57.2 NC_001973.1 + 143087 0.66 0.846991
Target:  5'- uGuCCGCAGaCGUCgCAGuGCuucugcgGCGCGGACg -3'
miRNA:   3'- uC-GGCGUCaGCAG-GUC-CG-------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 140032 0.67 0.794348
Target:  5'- cGGUgGCGGgcugCGcCCGGGCGCucgacgagaccaucGCGGACg -3'
miRNA:   3'- -UCGgCGUCa---GCaGGUCCGUG--------------UGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 138792 0.67 0.823182
Target:  5'- cAGCCGgAGUCGcUCUuGGC--GCGAGCc -3'
miRNA:   3'- -UCGGCgUCAGC-AGGuCCGugUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 138164 0.66 0.845399
Target:  5'- cGCCGCAGuucagagagcguguUCGUCCucuccauGGCggacaGCACGAcGCg -3'
miRNA:   3'- uCGGCGUC--------------AGCAGGu------CCG-----UGUGCU-UG- -5'
8057 5' -57.2 NC_001973.1 + 133924 0.7 0.651257
Target:  5'- cGCCGCcc-UGUCCAGGUgguagcACGCGGGCu -3'
miRNA:   3'- uCGGCGucaGCAGGUCCG------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 130199 0.68 0.750642
Target:  5'- cGCaCGCGGUCGgcggCAGGCGCagGCGAu- -3'
miRNA:   3'- uCG-GCGUCAGCag--GUCCGUG--UGCUug -5'
8057 5' -57.2 NC_001973.1 + 124096 0.66 0.838955
Target:  5'- cGCCGCggcgaguauuucgAGUUGUaCAGaaucGCGCGCGAACg -3'
miRNA:   3'- uCGGCG-------------UCAGCAgGUC----CGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 123432 0.71 0.590335
Target:  5'- uGCaCGCGGUCGUCagcGGCACGCa--- -3'
miRNA:   3'- uCG-GCGUCAGCAGgu-CCGUGUGcuug -5'
8057 5' -57.2 NC_001973.1 + 121673 0.67 0.831564
Target:  5'- cGCuCGCGG-CGcCCGgauaccGGUACGCGAGCu -3'
miRNA:   3'- uCG-GCGUCaGCaGGU------CCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 121496 0.68 0.750642
Target:  5'- gAGCCGCcagcgcgaAGUCGUUCA---GCGCGAACg -3'
miRNA:   3'- -UCGGCG--------UCAGCAGGUccgUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 121292 0.67 0.805911
Target:  5'- cGCgGCcGUCGcCCGcGGCGCGCGccGGCg -3'
miRNA:   3'- uCGgCGuCAGCaGGU-CCGUGUGC--UUG- -5'
8057 5' -57.2 NC_001973.1 + 117857 0.71 0.590335
Target:  5'- cAGCCGC--UCGUaCUgcggccacgugAGGCACACGAGCc -3'
miRNA:   3'- -UCGGCGucAGCA-GG-----------UCCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 114323 0.67 0.823182
Target:  5'- cGGCuCGU--UCGUCC-GGCuCGCGAGCa -3'
miRNA:   3'- -UCG-GCGucAGCAGGuCCGuGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.