miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8058 5' -59.9 NC_001973.1 + 77874 0.69 0.598712
Target:  5'- aCGGCCCa-CCGUCGAGCccgaggaccuGUGCcgUCGCa -3'
miRNA:   3'- aGUCGGGgaGGCAGCUCG----------CGUG--AGCG- -5'
8058 5' -59.9 NC_001973.1 + 157235 0.69 0.598712
Target:  5'- aCGGCCCa-CCaGUCGaAGUGCACggcCGCg -3'
miRNA:   3'- aGUCGGGgaGG-CAGC-UCGCGUGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 6869 0.69 0.599697
Target:  5'- -gAGCCgCgaggagaucuugcaCGUCGAGCGCcacACUCGCg -3'
miRNA:   3'- agUCGGgGag------------GCAGCUCGCG---UGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 16187 0.69 0.608566
Target:  5'- gUCGGCgCaggCCGcuaGAGCGCGCUgCGCg -3'
miRNA:   3'- -AGUCGgGga-GGCag-CUCGCGUGA-GCG- -5'
8058 5' -59.9 NC_001973.1 + 48009 0.69 0.618437
Target:  5'- --cGCCCUUUCGUCGAGuCGuCACgCGUc -3'
miRNA:   3'- aguCGGGGAGGCAGCUC-GC-GUGaGCG- -5'
8058 5' -59.9 NC_001973.1 + 123490 0.69 0.618437
Target:  5'- gCGGCUcgCCggcUCGUCGcacaccacGGCGCGCUCGCc -3'
miRNA:   3'- aGUCGG--GGa--GGCAGC--------UCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 87840 0.69 0.618437
Target:  5'- gCGGCCCCU-UGUCGGGCG-GCUgGUu -3'
miRNA:   3'- aGUCGGGGAgGCAGCUCGCgUGAgCG- -5'
8058 5' -59.9 NC_001973.1 + 27865 0.69 0.618437
Target:  5'- gCGGCCgCggCCG-CGGGCGCGggCGCg -3'
miRNA:   3'- aGUCGGgGa-GGCaGCUCGCGUgaGCG- -5'
8058 5' -59.9 NC_001973.1 + 44062 0.68 0.628317
Target:  5'- -gAGCUucuCCUCCGaaGAGCGCACguaCGUg -3'
miRNA:   3'- agUCGG---GGAGGCagCUCGCGUGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 69650 0.68 0.628317
Target:  5'- --cGCCCuccguuuugCUCCGcagcacgaggUCGGGCGCGgUCGCg -3'
miRNA:   3'- aguCGGG---------GAGGC----------AGCUCGCGUgAGCG- -5'
8058 5' -59.9 NC_001973.1 + 73695 0.68 0.6382
Target:  5'- -gGGCCCCgCCGcgcagucgaCGGGCGCGCcgUCGUa -3'
miRNA:   3'- agUCGGGGaGGCa--------GCUCGCGUG--AGCG- -5'
8058 5' -59.9 NC_001973.1 + 154992 0.68 0.645116
Target:  5'- uUCGGCCCCcgUCCGagUCGGGaCGCgaccaaccaaagucGCUgGCg -3'
miRNA:   3'- -AGUCGGGG--AGGC--AGCUC-GCG--------------UGAgCG- -5'
8058 5' -59.9 NC_001973.1 + 17580 0.68 0.657945
Target:  5'- aUCGGCgCCCga-GUCG-GCGUGCUgGCa -3'
miRNA:   3'- -AGUCG-GGGaggCAGCuCGCGUGAgCG- -5'
8058 5' -59.9 NC_001973.1 + 145022 0.68 0.661887
Target:  5'- gCGGCgCCCgagugcggcgcgagCgCGUCGAGCGCcgACUCGg -3'
miRNA:   3'- aGUCG-GGGa-------------G-GCAGCUCGCG--UGAGCg -5'
8058 5' -59.9 NC_001973.1 + 53174 0.68 0.661887
Target:  5'- cCAGCCgCCgguugugggacgccaUCCuGUcCGAGCGCACcUCGUc -3'
miRNA:   3'- aGUCGG-GG---------------AGG-CA-GCUCGCGUG-AGCG- -5'
8058 5' -59.9 NC_001973.1 + 6035 0.68 0.667793
Target:  5'- -gAGCgCgCUCCGUUGAcgcGCGCGCUCu- -3'
miRNA:   3'- agUCGgG-GAGGCAGCU---CGCGUGAGcg -5'
8058 5' -59.9 NC_001973.1 + 157903 0.68 0.677613
Target:  5'- gCGGCCgCCgcgcCCG-CGAGCGCGCaaUgGCu -3'
miRNA:   3'- aGUCGG-GGa---GGCaGCUCGCGUG--AgCG- -5'
8058 5' -59.9 NC_001973.1 + 57685 0.67 0.687398
Target:  5'- --cGCCaCCggaucgCCGgccUCGAGCGCGaauCUCGCg -3'
miRNA:   3'- aguCGG-GGa-----GGC---AGCUCGCGU---GAGCG- -5'
8058 5' -59.9 NC_001973.1 + 34914 0.67 0.706834
Target:  5'- gUCAuCgCUUCCGUggcgCGAGCGaGCUCGCg -3'
miRNA:   3'- -AGUcGgGGAGGCA----GCUCGCgUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 39539 0.67 0.716467
Target:  5'- --cGCCUCgUCCGUCGAuUGCACgccCGCc -3'
miRNA:   3'- aguCGGGG-AGGCAGCUcGCGUGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.