miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 5' -59.2 NC_001973.1 + 108445 0.7 0.542896
Target:  5'- cGCUCGCGCgaCGcccGCACCGugUGGCUGg -3'
miRNA:   3'- cCGAGCGCG--GCc--UGUGGUugGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 99943 0.7 0.542896
Target:  5'- uGGCcgauuUCGUGCa--ACACCAGCCAGUUGg -3'
miRNA:   3'- -CCG-----AGCGCGgccUGUGGUUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 53415 0.7 0.551655
Target:  5'- gGGCggaGCGCCGGGCGCgucgaagCAguacACCAGCa- -3'
miRNA:   3'- -CCGag-CGCGGCCUGUG-------GU----UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 157885 0.7 0.559476
Target:  5'- cGGCUCGUGUCGGaggucgcggccgccGCGCCcGCgAGCg- -3'
miRNA:   3'- -CCGAGCGCGGCC--------------UGUGGuUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 108258 0.7 0.562417
Target:  5'- cGGCUgccgGCGCgCGGAgACgGACCGGCg- -3'
miRNA:   3'- -CCGAg---CGCG-GCCUgUGgUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 143521 0.7 0.572249
Target:  5'- cGGUgaCGCGCCcGAUGCUGGCCGGCUc -3'
miRNA:   3'- -CCGa-GCGCGGcCUGUGGUUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 141404 0.7 0.582122
Target:  5'- uGUUCGUGCgGcccGACAUCGugCAGCUGa -3'
miRNA:   3'- cCGAGCGCGgC---CUGUGGUugGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 53585 0.69 0.589054
Target:  5'- aGGCgCGCGCCGG-CGCCGaggauuauuuaucgACUGGCg- -3'
miRNA:   3'- -CCGaGCGCGGCCuGUGGU--------------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 46400 0.69 0.591037
Target:  5'- cGGCgcgCGCGCgacgacgacgacuCGGACG-CGACCAGCg- -3'
miRNA:   3'- -CCGa--GCGCG-------------GCCUGUgGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 36153 0.69 0.611921
Target:  5'- gGGCagCGCGCUGGuCGCguucuugcaCGACCAGCg- -3'
miRNA:   3'- -CCGa-GCGCGGCCuGUG---------GUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 4935 0.69 0.621891
Target:  5'- gGGCUCGuCGCCG---ACCGGCCGGUc- -3'
miRNA:   3'- -CCGAGC-GCGGCcugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 139637 0.69 0.621891
Target:  5'- uGGagaacgCGCaGCCGGACccgaccGCCGGCCAGCc- -3'
miRNA:   3'- -CCga----GCG-CGGCCUG------UGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 77655 0.69 0.631869
Target:  5'- cGUUCGaGuuGGcCACCGACCGGCa- -3'
miRNA:   3'- cCGAGCgCggCCuGUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 146059 0.69 0.631869
Target:  5'- aGGUUgG-GCCGcGGCGCCgAGCCGGCUc -3'
miRNA:   3'- -CCGAgCgCGGC-CUGUGG-UUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 40605 0.69 0.631869
Target:  5'- uGGCggagCGCGCC----GCCGACCAGCa- -3'
miRNA:   3'- -CCGa---GCGCGGccugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 94886 0.68 0.650821
Target:  5'- uGGCUCGaaaacaaccguccCGCCGa--GCCGACCGGCa- -3'
miRNA:   3'- -CCGAGC-------------GCGGCcugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 95096 0.68 0.661774
Target:  5'- cGCUCGUGCgCGGGCcgcgaCGACUucaAGCUGg -3'
miRNA:   3'- cCGAGCGCG-GCCUGug---GUUGG---UCGAC- -5'
8059 5' -59.2 NC_001973.1 + 66926 0.68 0.661774
Target:  5'- cGCUacaGCgGCCaGACGCgucuCAACCAGCUGu -3'
miRNA:   3'- cCGAg--CG-CGGcCUGUG----GUUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 76368 0.68 0.661774
Target:  5'- cGCgaccUGUGCCuGGACACCAACCcGgUGg -3'
miRNA:   3'- cCGa---GCGCGG-CCUGUGGUUGGuCgAC- -5'
8059 5' -59.2 NC_001973.1 + 47798 0.68 0.671707
Target:  5'- cGGC-CGCGCCGGccgacgcguGCGCCAaaucgcccGCCcGCUc -3'
miRNA:   3'- -CCGaGCGCGGCC---------UGUGGU--------UGGuCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.