miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 5' -53.6 NC_001973.1 + 159169 0.68 0.912683
Target:  5'- cCGGCGCCa--AGUu--GAAGAGCGCg -3'
miRNA:   3'- aGUUGCGGcugUCGucuCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 158817 0.66 0.967294
Target:  5'- gUCAAauugaaGCCGGCGGCcGAGc---GCGCg -3'
miRNA:   3'- -AGUUg-----CGGCUGUCGuCUCuucuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 158229 0.67 0.939642
Target:  5'- aCGGCGCauCGACAGCAuauucaacGAGAucgucGAGCuGCg -3'
miRNA:   3'- aGUUGCG--GCUGUCGU--------CUCUu----CUCG-CG- -5'
8060 5' -53.6 NC_001973.1 + 152388 0.69 0.864853
Target:  5'- cCGGCGCgGGCGggcGCGGGGcGGcGCGCa -3'
miRNA:   3'- aGUUGCGgCUGU---CGUCUCuUCuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 147067 0.7 0.857118
Target:  5'- ---gUGCCGAUcuGGCGcGuGGAGGGCGCg -3'
miRNA:   3'- aguuGCGGCUG--UCGU-CuCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 146069 0.67 0.93474
Target:  5'- gCGGCGCCGAgcCGGCucGGgcGGGCGg -3'
miRNA:   3'- aGUUGCGGCU--GUCGucUCuuCUCGCg -5'
8060 5' -53.6 NC_001973.1 + 145022 0.7 0.849174
Target:  5'- gCGGCGcCCGAguGCGGcgc-GAGCGCg -3'
miRNA:   3'- aGUUGC-GGCUguCGUCucuuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 144731 0.72 0.729456
Target:  5'- -gAGCGCCaGGCGGCGGcGGAGGcggccgaggaggcGGCGCg -3'
miRNA:   3'- agUUGCGG-CUGUCGUC-UCUUC-------------UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 144217 0.68 0.909036
Target:  5'- gCGGCGCCGAggccgaaucgcUggucgagugcgcgcuGGCGGAcGAGGGCGCg -3'
miRNA:   3'- aGUUGCGGCU-----------G---------------UCGUCUcUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 143161 0.78 0.403636
Target:  5'- aUCGACGCCgGGCGGCugcguGGAucGGAGAGUGCg -3'
miRNA:   3'- -AGUUGCGG-CUGUCG-----UCU--CUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 142602 0.66 0.967294
Target:  5'- -gGGCGCa---AGCGGAGGcgcuccgaAGGGCGCg -3'
miRNA:   3'- agUUGCGgcugUCGUCUCU--------UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 138252 0.68 0.929594
Target:  5'- --uGCGCCGAaAGUccAGAGGAGuGGCGUu -3'
miRNA:   3'- aguUGCGGCUgUCG--UCUCUUC-UCGCG- -5'
8060 5' -53.6 NC_001973.1 + 137879 0.66 0.960546
Target:  5'- gUCAGgGCCGcguCGGC-GAGGcccGAGUGCa -3'
miRNA:   3'- -AGUUgCGGCu--GUCGuCUCUu--CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 133505 0.73 0.700204
Target:  5'- gUCcACGCUcggcuugucgGGCAGCAGAGgcGAGgGCc -3'
miRNA:   3'- -AGuUGCGG----------CUGUCGUCUCuuCUCgCG- -5'
8060 5' -53.6 NC_001973.1 + 133102 0.75 0.57632
Target:  5'- --cGCGCUugGAC-GUGGAGAGGAGCGCg -3'
miRNA:   3'- aguUGCGG--CUGuCGUCUCUUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 132543 0.69 0.893584
Target:  5'- -gGGCG-CGGCGGCGGGcucGAGCGCg -3'
miRNA:   3'- agUUGCgGCUGUCGUCUcuuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 130194 0.67 0.952486
Target:  5'- aUCGACGCacgcgguCGGCGGCAGgcgcAGgcGAuaaaGCGCg -3'
miRNA:   3'- -AGUUGCG-------GCUGUCGUC----UCuuCU----CGCG- -5'
8060 5' -53.6 NC_001973.1 + 130105 0.66 0.972907
Target:  5'- -uGGCGUCGACAguccucGCAGAagcccguGAAGAccGCGCc -3'
miRNA:   3'- agUUGCGGCUGU------CGUCU-------CUUCU--CGCG- -5'
8060 5' -53.6 NC_001973.1 + 126072 0.68 0.912683
Target:  5'- gCAACGUCGAUuauuaAGUuGAGcccGAGAGCGUg -3'
miRNA:   3'- aGUUGCGGCUG-----UCGuCUC---UUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 125609 0.66 0.973182
Target:  5'- cUUGACGCCGAUAaucuugacCGGAGAuuuGGGCGg -3'
miRNA:   3'- -AGUUGCGGCUGUc-------GUCUCUu--CUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.