miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 3' -48.8 NC_001973.1 + 132541 0.66 0.998972
Target:  5'- -----cCGGGCGCggcgGCGGgcucGAGCGCGGc -3'
miRNA:   3'- uuauauGUCCGUGa---UGCU----CUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 55972 0.66 0.998972
Target:  5'- ----gAgAGGCGC-GCGAcGACGCGAa -3'
miRNA:   3'- uuauaUgUCCGUGaUGCUcUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 36312 0.66 0.998972
Target:  5'- ----cACGGGCGCcGCGGccGACGCGGc -3'
miRNA:   3'- uuauaUGUCCGUGaUGCUc-UUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 65648 0.66 0.998972
Target:  5'- ----aGCAGGgcUACUuuauguGCGAGAGCGUGGc -3'
miRNA:   3'- uuauaUGUCC--GUGA------UGCUCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 29776 0.66 0.998745
Target:  5'- -----cCAGGCGCUGgcCGucGACGCGAc -3'
miRNA:   3'- uuauauGUCCGUGAU--GCucUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 49138 0.66 0.998745
Target:  5'- ---cUGCAGGCgugGCUGCucGAGGAgGUGAu -3'
miRNA:   3'- uuauAUGUCCG---UGAUG--CUCUUgCGCU- -5'
8061 3' -48.8 NC_001973.1 + 23392 0.66 0.998477
Target:  5'- ---uUGCGGGCGugACGGcGAGCGCGc -3'
miRNA:   3'- uuauAUGUCCGUgaUGCU-CUUGCGCu -5'
8061 3' -48.8 NC_001973.1 + 61075 0.66 0.998477
Target:  5'- --gGUACAGGCGCagacCGGGcaggccGCGCGGc -3'
miRNA:   3'- uuaUAUGUCCGUGau--GCUCu-----UGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 44441 0.66 0.998477
Target:  5'- ----aACGGGCGCUcggGCGcGGGCGCu- -3'
miRNA:   3'- uuauaUGUCCGUGA---UGCuCUUGCGcu -5'
8061 3' -48.8 NC_001973.1 + 75275 0.66 0.998161
Target:  5'- ----gACGGGCuCUugGAGaAGCGCu- -3'
miRNA:   3'- uuauaUGUCCGuGAugCUC-UUGCGcu -5'
8061 3' -48.8 NC_001973.1 + 152335 0.67 0.997792
Target:  5'- ----cGCGGuGCGCggGCG-GGGCGCGAu -3'
miRNA:   3'- uuauaUGUC-CGUGa-UGCuCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 120588 0.67 0.996867
Target:  5'- ----cACGGGCGCgcCGAGu-CGCGGu -3'
miRNA:   3'- uuauaUGUCCGUGauGCUCuuGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 93930 0.67 0.996867
Target:  5'- --aGUGgAGGUGCUG-GAcGAGCGCGAg -3'
miRNA:   3'- uuaUAUgUCCGUGAUgCU-CUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 7904 0.67 0.996867
Target:  5'- ---uUGCAGGCGuucugUUGCGAGGcggaGCGCGu -3'
miRNA:   3'- uuauAUGUCCGU-----GAUGCUCU----UGCGCu -5'
8061 3' -48.8 NC_001973.1 + 113587 0.67 0.996813
Target:  5'- --gGUGCcGGCGCUgccgcucACGAacacGGGCGCGAa -3'
miRNA:   3'- uuaUAUGuCCGUGA-------UGCU----CUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 81039 0.67 0.996296
Target:  5'- cGGUAUGCGGGcCGCgucgACGGGcgUGCGc -3'
miRNA:   3'- -UUAUAUGUCC-GUGa---UGCUCuuGCGCu -5'
8061 3' -48.8 NC_001973.1 + 118090 0.67 0.995643
Target:  5'- cGAUAUACguGGGCGugACGGuGGGCGCGGc -3'
miRNA:   3'- -UUAUAUG--UCCGUgaUGCU-CUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 143667 0.68 0.994898
Target:  5'- ----gGCAGGCGCacgcACGAGAccacguACGCGu -3'
miRNA:   3'- uuauaUGUCCGUGa---UGCUCU------UGCGCu -5'
8061 3' -48.8 NC_001973.1 + 65316 0.68 0.993099
Target:  5'- ---cUGCGaGCGCUGCaAGGGCGCGGa -3'
miRNA:   3'- uuauAUGUcCGUGAUGcUCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 136574 0.68 0.993099
Target:  5'- ----aGCAuGGCGCUGCGcGccGGCGCGAc -3'
miRNA:   3'- uuauaUGU-CCGUGAUGCuC--UUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.