miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 5' -64.2 NC_001973.1 + 158760 0.66 0.61297
Target:  5'- aCCGAgCgcgCGCCGACcuacaCGCCCGaCGCc -3'
miRNA:   3'- aGGCU-Ga--GCGGCUGcc---GCGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 158677 0.71 0.318605
Target:  5'- gUCCGGCgaaGCCGGCGGCcgagcGCgCGCCu- -3'
miRNA:   3'- -AGGCUGag-CGGCUGCCG-----CGgGCGGcg -5'
8061 5' -64.2 NC_001973.1 + 158612 0.69 0.448815
Target:  5'- cUCCGcCUcCGCCGuugcCGcCGCCCGgCGCg -3'
miRNA:   3'- -AGGCuGA-GCGGCu---GCcGCGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 158496 0.69 0.440361
Target:  5'- gCCGAUUCGacaagaaacuCCGAcCGGCuuguuuGCgCCGCCGCc -3'
miRNA:   3'- aGGCUGAGC----------GGCU-GCCG------CG-GGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 158415 0.7 0.368605
Target:  5'- gCCGACUCGacaagaaacuCCGAUcGCGCCCGCg-- -3'
miRNA:   3'- aGGCUGAGC----------GGCUGcCGCGGGCGgcg -5'
8061 5' -64.2 NC_001973.1 + 158385 0.79 0.10228
Target:  5'- gCCGACUCGuCCGAUcGCGCCCG-CGCc -3'
miRNA:   3'- aGGCUGAGC-GGCUGcCGCGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 158337 0.69 0.399499
Target:  5'- gCCGGCUCGUCaACccGCGCCCG-CGCc -3'
miRNA:   3'- aGGCUGAGCGGcUGc-CGCGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 158060 0.72 0.273876
Target:  5'- -aCGACUCGCCGAggauaCGGCGaCUGCagaGCa -3'
miRNA:   3'- agGCUGAGCGGCU-----GCCGCgGGCGg--CG- -5'
8061 5' -64.2 NC_001973.1 + 157884 0.67 0.556338
Target:  5'- -gCGGCUCGUguCGGaggucGCGgCCGCCGCg -3'
miRNA:   3'- agGCUGAGCG--GCUgc---CGCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 157716 0.7 0.37162
Target:  5'- gCCGaACUUGCCGuugacgagguggagcGCGGUGCgCgCGCUGCa -3'
miRNA:   3'- aGGC-UGAGCGGC---------------UGCCGCG-G-GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 151065 0.69 0.43952
Target:  5'- cUCGAgCUCgGCgGACGcguaggauccuacGCGCCCGCCGg -3'
miRNA:   3'- aGGCU-GAG-CGgCUGC-------------CGCGGGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 150895 0.7 0.383074
Target:  5'- uUCCacgaGCUCgGCCGACGcguaagauccuacGCGUCCGCCGg -3'
miRNA:   3'- -AGGc---UGAG-CGGCUGC-------------CGCGGGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 149306 0.66 0.584521
Target:  5'- cCCGuaaagGCCG-CGGgGCCUGUCGCu -3'
miRNA:   3'- aGGCugag-CGGCuGCCgCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 146000 0.67 0.528562
Target:  5'- gCCGGCUCGggGAgCGG-GUCCGCCGg -3'
miRNA:   3'- aGGCUGAGCggCU-GCCgCGGGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 145681 0.73 0.229079
Target:  5'- aUCCGACUCGUCGGCGagaGUGCCUauuuuuguuuguGCCGa -3'
miRNA:   3'- -AGGCUGAGCGGCUGC---CGCGGG------------CGGCg -5'
8061 5' -64.2 NC_001973.1 + 145013 0.71 0.339391
Target:  5'- -gCGGCU--CCGGCGGCGCCCGagUGCg -3'
miRNA:   3'- agGCUGAgcGGCUGCCGCGGGCg-GCG- -5'
8061 5' -64.2 NC_001973.1 + 143740 0.66 0.584521
Target:  5'- gUCC-ACUUGCCGcCGGCucGUCUcgaaGCCGCu -3'
miRNA:   3'- -AGGcUGAGCGGCuGCCG--CGGG----CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 142201 0.68 0.457359
Target:  5'- -aCGACUCGCUGAagauccgaaUGGUGCUCGUCa- -3'
miRNA:   3'- agGCUGAGCGGCU---------GCCGCGGGCGGcg -5'
8061 5' -64.2 NC_001973.1 + 141947 0.67 0.537768
Target:  5'- -gCaGCUCGCCGGCgGGCGaCCC-CCaGCg -3'
miRNA:   3'- agGcUGAGCGGCUG-CCGC-GGGcGG-CG- -5'
8061 5' -64.2 NC_001973.1 + 140438 0.78 0.112786
Target:  5'- uUUCGACUCGCCGGCGaggaGCGCuucuCCGCCGa -3'
miRNA:   3'- -AGGCUGAGCGGCUGC----CGCG----GGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.