Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8066 | 3' | -60.8 | NC_001973.1 | + | 153543 | 0.66 | 0.771924 |
Target: 5'- aGAgCCGAgccgCGACCCCcaaCCGAUGCu -3' miRNA: 3'- cUUgGGCUa---GCUGGGGcc-GGCUGCGc -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 160690 | 0.66 | 0.771924 |
Target: 5'- -uGCCUuaacUCGAgCUCGGCgGACGCGu -3' miRNA: 3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 130864 | 0.66 | 0.771924 |
Target: 5'- -uGCCUaaacUCGAgCUCGGCgGACGCGu -3' miRNA: 3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 127425 | 0.66 | 0.771924 |
Target: 5'- -uGCCUaaacUCGAgCUCGGCgGACGCGu -3' miRNA: 3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 49694 | 0.66 | 0.769243 |
Target: 5'- uGGACCUG-UCGAgCCgcgccgugcaguauCCGGCCGACGa- -3' miRNA: 3'- -CUUGGGCuAGCU-GG--------------GGCCGGCUGCgc -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 142411 | 0.66 | 0.762947 |
Target: 5'- aGAGCCggcagaCGAUCGugCCCGgcgaGCCGAuCGUc -3' miRNA: 3'- -CUUGG------GCUAGCugGGGC----CGGCU-GCGc -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 16180 | 0.66 | 0.762947 |
Target: 5'- -cGCCCGuGUCGGCgCaGGCCGcuagaGCGCGc -3' miRNA: 3'- cuUGGGC-UAGCUGgGgCCGGC-----UGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 74256 | 0.66 | 0.762947 |
Target: 5'- -uGCCCGAugUCGGCggugauguacgUgUGGCCGGCGCc -3' miRNA: 3'- cuUGGGCU--AGCUG-----------GgGCCGGCUGCGc -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 106862 | 0.66 | 0.762947 |
Target: 5'- -cGCCCGcgCGguauuaucgcGCgCCGGCCGaaccgugcGCGCGg -3' miRNA: 3'- cuUGGGCuaGC----------UGgGGCCGGC--------UGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 16351 | 0.66 | 0.762947 |
Target: 5'- -cGCCUaaacUCGAgCUCGGCgGACGCGu -3' miRNA: 3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 130672 | 0.66 | 0.75751 |
Target: 5'- aAGCCCGaugagaucaugccuaAacUCGAgCUCGGCgGACGCGu -3' miRNA: 3'- cUUGGGC---------------U--AGCUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 22766 | 0.66 | 0.753865 |
Target: 5'- cGAGCUCGAcaUCGA-CCUGGUCGG-GCGg -3' miRNA: 3'- -CUUGGGCU--AGCUgGGGCCGGCUgCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 95690 | 0.66 | 0.753865 |
Target: 5'- cGGCCCGA-CGAgCCCuacaccGCCGACgGCGc -3' miRNA: 3'- cUUGGGCUaGCUgGGGc-----CGGCUG-CGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 150198 | 0.66 | 0.753865 |
Target: 5'- uGGGCCgCGGcUCGGCCUCGGCUuGCuggGCGg -3' miRNA: 3'- -CUUGG-GCU-AGCUGGGGCCGGcUG---CGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 117405 | 0.66 | 0.753865 |
Target: 5'- cAGCUCG-UCGAUCCacguGGCCGACGa- -3' miRNA: 3'- cUUGGGCuAGCUGGGg---CCGGCUGCgc -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 72262 | 0.66 | 0.748369 |
Target: 5'- aAGCCCGaugacaucaucccuaAcUCGAgCUCGGCgGACGCGu -3' miRNA: 3'- cUUGGGC---------------U-AGCUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 2854 | 0.66 | 0.748369 |
Target: 5'- aAGCCCGAUgaGAUcaugcuuugaucacgCUCGGCgGACGCGc -3' miRNA: 3'- cUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 130594 | 0.66 | 0.748369 |
Target: 5'- aAACCCGAUgacaucaugccuaaaCcGAgCUCGGCgGACGCGu -3' miRNA: 3'- cUUGGGCUA---------------G-CUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 160440 | 0.66 | 0.748369 |
Target: 5'- aAACCCGAUgacaucaugccuaaaCuGAgCUCGGCgGACGCGu -3' miRNA: 3'- cUUGGGCUA---------------G-CUgGGGCCGgCUGCGC- -5' |
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8066 | 3' | -60.8 | NC_001973.1 | + | 72198 | 0.66 | 0.744686 |
Target: 5'- cAugCUGAagUUGAgCUCGGCgGACGCGu -3' miRNA: 3'- cUugGGCU--AGCUgGGGCCGgCUGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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