miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 5' -51.5 NC_001973.1 + 158825 0.66 0.988182
Target:  5'- gAAGCCGGc-GGCCGAgc--GCGCGGa -3'
miRNA:   3'- gUUUGGCUuaCCGGCUguauCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 152791 0.71 0.870455
Target:  5'- -cAACgGggUGGCCGACAaGGUGUu- -3'
miRNA:   3'- guUUGgCuuACCGGCUGUaUCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 152375 0.84 0.284416
Target:  5'- gCGAGCCGGAcGGCCGGCGcgggcgGGCGCGGg -3'
miRNA:   3'- -GUUUGGCUUaCCGGCUGUa-----UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 152296 0.7 0.92359
Target:  5'- aCAGACUGAc-GGUCGAUcgAGCGCGc -3'
miRNA:   3'- -GUUUGGCUuaCCGGCUGuaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 146010 0.67 0.976142
Target:  5'- gGAGCgGGuccGCCGGCucgAGCGCGGg -3'
miRNA:   3'- gUUUGgCUuacCGGCUGua-UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 145101 0.66 0.992073
Target:  5'- uGAGCUucaGAGUGGCCGACGccaAGUugacggccgaGCAGg -3'
miRNA:   3'- gUUUGG---CUUACCGGCUGUa--UCG----------CGUC- -5'
8068 5' -51.5 NC_001973.1 + 135093 0.68 0.970311
Target:  5'- cCAGGCCGAacacgugGUGGuCCGACAgucGGgGguGa -3'
miRNA:   3'- -GUUUGGCU-------UACC-GGCUGUa--UCgCguC- -5'
8068 5' -51.5 NC_001973.1 + 133285 0.67 0.97348
Target:  5'- -cGGCCGAGaacgcGGCCGGCGgcGGCGCc- -3'
miRNA:   3'- guUUGGCUUa----CCGGCUGUa-UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 132534 0.67 0.982953
Target:  5'- gAGGCCGccgGGCgCGGCGgcgggcucgAGCGCGGc -3'
miRNA:   3'- gUUUGGCuuaCCG-GCUGUa--------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 128561 0.68 0.967523
Target:  5'- uGAACCGcuUGGCCGccgGCAUcucgcuGGCGCuGa -3'
miRNA:   3'- gUUUGGCuuACCGGC---UGUA------UCGCGuC- -5'
8068 5' -51.5 NC_001973.1 + 123282 0.66 0.989616
Target:  5'- aCAGGCCGGGcaGGCgCGGCc-AGCGCAc -3'
miRNA:   3'- -GUUUGGCUUa-CCG-GCUGuaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 119187 0.68 0.960676
Target:  5'- uCGAGCCGAc--GCCGAagaAGCGCGGc -3'
miRNA:   3'- -GUUUGGCUuacCGGCUguaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 118426 0.66 0.98486
Target:  5'- -uGGCCGccgGGCuCGACG-AGCGCAa -3'
miRNA:   3'- guUUGGCuuaCCG-GCUGUaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 107890 0.67 0.976142
Target:  5'- -cGGCCGu-UGGCCGACGccgaacugAGCGCc- -3'
miRNA:   3'- guUUGGCuuACCGGCUGUa-------UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 103904 0.67 0.982953
Target:  5'- gCGAGCCGccgcGGCgCGACGaggAGCGCGu -3'
miRNA:   3'- -GUUUGGCuua-CCG-GCUGUa--UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 102710 0.71 0.870455
Target:  5'- aCGGGCCGGucaagauuuucGUGGCCGcCAgucgcgAGCGCAa -3'
miRNA:   3'- -GUUUGGCU-----------UACCGGCuGUa-----UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 95710 0.75 0.713675
Target:  5'- --cGCCGAcggcgcgGUGcGCCGGCuguUGGCGCAGg -3'
miRNA:   3'- guuUGGCU-------UAC-CGGCUGu--AUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 93851 0.67 0.978602
Target:  5'- -uGGCCGuGUGGCUGAagguGCGCAu -3'
miRNA:   3'- guUUGGCuUACCGGCUguauCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 88477 0.66 0.99091
Target:  5'- aCAcgUCGAcgGUGccGCCGGCGcGGCGCGGc -3'
miRNA:   3'- -GUuuGGCU--UAC--CGGCUGUaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 87442 0.67 0.98087
Target:  5'- -uAGCCauggGGAUGGgcCCGACGgcGCGCAGc -3'
miRNA:   3'- guUUGG----CUUACC--GGCUGUauCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.