miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8069 5' -53.4 NC_001973.1 + 136316 0.66 0.982097
Target:  5'- gGGUaGUCGAgcUCGUUGCGCUGGcUCGg -3'
miRNA:   3'- -CCGcUAGUUa-AGCAGCGCGGUCcAGC- -5'
8069 5' -53.4 NC_001973.1 + 22589 0.66 0.982097
Target:  5'- cGCGAUCcgcgagUCGaaCGCGUCGGGcCGg -3'
miRNA:   3'- cCGCUAGuua---AGCa-GCGCGGUCCaGC- -5'
8069 5' -53.4 NC_001973.1 + 52611 0.66 0.982097
Target:  5'- aGCGAUCAAagucaaaGUCGggaCGCC-GGUCGa -3'
miRNA:   3'- cCGCUAGUUaag----CAGC---GCGGuCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 102712 0.66 0.980006
Target:  5'- gGGcCGGUCAAgauuUUCGUgGcCGCCA-GUCGc -3'
miRNA:   3'- -CC-GCUAGUU----AAGCAgC-GCGGUcCAGC- -5'
8069 5' -53.4 NC_001973.1 + 3696 0.66 0.980006
Target:  5'- uGGUGAUg---UCGUaGCGCC-GGUCGc -3'
miRNA:   3'- -CCGCUAguuaAGCAgCGCGGuCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 150061 0.66 0.977739
Target:  5'- aGGCuggaaaucugGGUCGAUUUcaaaaaucaaGUCGCGCC-GGUCc -3'
miRNA:   3'- -CCG----------CUAGUUAAG----------CAGCGCGGuCCAGc -5'
8069 5' -53.4 NC_001973.1 + 51465 0.66 0.975287
Target:  5'- gGGCGAgcUCGAg----CG-GCCGGGUCGa -3'
miRNA:   3'- -CCGCU--AGUUaagcaGCgCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 5840 0.66 0.975287
Target:  5'- gGGCGcgUcGUUCGgcgagcgcaCGCGCCGGcGUCu -3'
miRNA:   3'- -CCGCuaGuUAAGCa--------GCGCGGUC-CAGc -5'
8069 5' -53.4 NC_001973.1 + 136999 0.66 0.972644
Target:  5'- aGCcccUCGAgcgCGU-GCGCCGGGUCGc -3'
miRNA:   3'- cCGcu-AGUUaa-GCAgCGCGGUCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 53333 0.67 0.969803
Target:  5'- gGGCG-UCGAUgCGccCGCGCC-GGUCc -3'
miRNA:   3'- -CCGCuAGUUAaGCa-GCGCGGuCCAGc -5'
8069 5' -53.4 NC_001973.1 + 34001 0.67 0.969803
Target:  5'- cGGUuGUCGAgcgCGUCGUccacgGCCcGGUCGa -3'
miRNA:   3'- -CCGcUAGUUaa-GCAGCG-----CGGuCCAGC- -5'
8069 5' -53.4 NC_001973.1 + 126690 0.67 0.966757
Target:  5'- aGCcGUUucggCGUCGCGCCGGGcCa -3'
miRNA:   3'- cCGcUAGuuaaGCAGCGCGGUCCaGc -5'
8069 5' -53.4 NC_001973.1 + 82177 0.67 0.964828
Target:  5'- cGGCGAgauagccgucgaggCAGUUCuuGUCGCGCUuuucGUCGg -3'
miRNA:   3'- -CCGCUa-------------GUUAAG--CAGCGCGGuc--CAGC- -5'
8069 5' -53.4 NC_001973.1 + 8423 0.67 0.9635
Target:  5'- cGGCaaGAgccgcCGcgUCGUCGCGCCc-GUCGa -3'
miRNA:   3'- -CCG--CUa----GUuaAGCAGCGCGGucCAGC- -5'
8069 5' -53.4 NC_001973.1 + 7846 0.67 0.9635
Target:  5'- cGGCGccgcgcccGUCGAgcUGgCGCGCCAGGgcgCGu -3'
miRNA:   3'- -CCGC--------UAGUUaaGCaGCGCGGUCCa--GC- -5'
8069 5' -53.4 NC_001973.1 + 40127 0.67 0.956332
Target:  5'- gGGUGG-CGAcUCGUCGCGCCcaucGUCu -3'
miRNA:   3'- -CCGCUaGUUaAGCAGCGCGGuc--CAGc -5'
8069 5' -53.4 NC_001973.1 + 81077 0.67 0.956332
Target:  5'- gGGacaGGUCGAUggCGuUCGCGCUGGGcgCGg -3'
miRNA:   3'- -CCg--CUAGUUAa-GC-AGCGCGGUCCa-GC- -5'
8069 5' -53.4 NC_001973.1 + 102641 0.67 0.952412
Target:  5'- cGGCGcgCGAcuggcaaacgCGcUCGUGCCAGGUgCGc -3'
miRNA:   3'- -CCGCuaGUUaa--------GC-AGCGCGGUCCA-GC- -5'
8069 5' -53.4 NC_001973.1 + 2885 0.67 0.952412
Target:  5'- cGGCGGacgCGcgUCGUCGCGCUuuGcUCGc -3'
miRNA:   3'- -CCGCUa--GUuaAGCAGCGCGGucC-AGC- -5'
8069 5' -53.4 NC_001973.1 + 80043 0.68 0.948262
Target:  5'- uGGUGAUgaCGGgcUUG-CGCGCCGGGUCc -3'
miRNA:   3'- -CCGCUA--GUUa-AGCaGCGCGGUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.