miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8070 3' -59.4 NC_001973.1 + 136745 0.66 0.813236
Target:  5'- uGUCGAGCGUCucguCGCGCaCGuugcgcacGCUCGu -3'
miRNA:   3'- gCAGCUCGCAG----GCGCG-GCcuu-----CGAGU- -5'
8070 3' -59.4 NC_001973.1 + 63642 0.66 0.804729
Target:  5'- gCGUgGGGCGg-CGCGCCGGccGCc-- -3'
miRNA:   3'- -GCAgCUCGCagGCGCGGCCuuCGagu -5'
8070 3' -59.4 NC_001973.1 + 53413 0.66 0.796077
Target:  5'- --aCGGGCGga-GCGCCGGgcGCgUCGa -3'
miRNA:   3'- gcaGCUCGCaggCGCGGCCuuCG-AGU- -5'
8070 3' -59.4 NC_001973.1 + 48016 0.66 0.796077
Target:  5'- uCGUCGAGuCGUCaCGCGUCGaaaauGuCUCAa -3'
miRNA:   3'- -GCAGCUC-GCAG-GCGCGGCcuu--C-GAGU- -5'
8070 3' -59.4 NC_001973.1 + 77012 0.66 0.787286
Target:  5'- uCGUCGGGCGgcggCgGCGCgcgcaaGGAcgauAGCUCc -3'
miRNA:   3'- -GCAGCUCGCa---GgCGCGg-----CCU----UCGAGu -5'
8070 3' -59.4 NC_001973.1 + 56369 0.66 0.787286
Target:  5'- -cUCG-GCG-CCGCGCuCGGcgccAGGCUCGg -3'
miRNA:   3'- gcAGCuCGCaGGCGCG-GCC----UUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 145602 0.66 0.787286
Target:  5'- cCGUggaccUGAGCGUCCuCGUCGaGAuuGCUCAa -3'
miRNA:   3'- -GCA-----GCUCGCAGGcGCGGC-CUu-CGAGU- -5'
8070 3' -59.4 NC_001973.1 + 119184 0.66 0.778365
Target:  5'- cCGUCGAGCcgacgCCGaagaaGCgCGGcGGCUCGc -3'
miRNA:   3'- -GCAGCUCGca---GGCg----CG-GCCuUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 33394 0.67 0.759241
Target:  5'- cCGaCGAcGCGUCCGCGCaauccauCGucAGCUCGg -3'
miRNA:   3'- -GCaGCU-CGCAGGCGCG-------GCcuUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 26620 0.67 0.750899
Target:  5'- cCGUUuGGCGgcuuccaagUCCGCGCCGGcGGGC-CAg -3'
miRNA:   3'- -GCAGcUCGC---------AGGCGCGGCC-UUCGaGU- -5'
8070 3' -59.4 NC_001973.1 + 155523 0.67 0.750899
Target:  5'- cCGUUGAGCGUCC-CGCCcagcccGCUCc -3'
miRNA:   3'- -GCAGCUCGCAGGcGCGGccuu--CGAGu -5'
8070 3' -59.4 NC_001973.1 + 55621 0.67 0.750899
Target:  5'- cCGaCGAGCGagCGCGCgugcaGGucGCUCAa -3'
miRNA:   3'- -GCaGCUCGCagGCGCGg----CCuuCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 65024 0.67 0.749034
Target:  5'- uGUCGAGCGUCaaguucaacaGCUGGAAGUa-- -3'
miRNA:   3'- gCAGCUCGCAGgcg-------CGGCCUUCGagu -5'
8070 3' -59.4 NC_001973.1 + 29709 0.67 0.741538
Target:  5'- uGagGAGCGUCCGCG-CGGAcauGCa-- -3'
miRNA:   3'- gCagCUCGCAGGCGCgGCCUu--CGagu -5'
8070 3' -59.4 NC_001973.1 + 74211 0.67 0.732087
Target:  5'- --aCGAGC-UCgGCGUCGGAGGCg-- -3'
miRNA:   3'- gcaGCUCGcAGgCGCGGCCUUCGagu -5'
8070 3' -59.4 NC_001973.1 + 159298 0.67 0.732087
Target:  5'- uGUUugaGAGCG-CCGUGCUGGAccuGUUCAa -3'
miRNA:   3'- gCAG---CUCGCaGGCGCGGCCUu--CGAGU- -5'
8070 3' -59.4 NC_001973.1 + 41410 0.69 0.64437
Target:  5'- uGUCGcGCGccgccUCCGCGUCGGccgacAGGCUCc -3'
miRNA:   3'- gCAGCuCGC-----AGGCGCGGCC-----UUCGAGu -5'
8070 3' -59.4 NC_001973.1 + 83811 0.69 0.634476
Target:  5'- --aCGAGCugggCCGCGCgCGGcgGAGCUCGa -3'
miRNA:   3'- gcaGCUCGca--GGCGCG-GCC--UUCGAGU- -5'
8070 3' -59.4 NC_001973.1 + 17854 0.69 0.631506
Target:  5'- cCGUCGAaaaaguaccacgagGCGUCCGCGUCGcGccGCUg- -3'
miRNA:   3'- -GCAGCU--------------CGCAGGCGCGGC-CuuCGAgu -5'
8070 3' -59.4 NC_001973.1 + 121297 0.7 0.593966
Target:  5'- cCGUCGcccGCGgCgCGCGCCGGcggacgcgccgacGAGCUCAc -3'
miRNA:   3'- -GCAGCu--CGCaG-GCGCGGCC-------------UUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.