miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8070 5' -47.6 NC_001973.1 + 35168 0.66 0.999851
Target:  5'- -aCGCUGgc-GCGACGCAgcGAccucGUCGc -3'
miRNA:   3'- uaGCGGCaaaUGCUGCGUuuCU----UAGC- -5'
8070 5' -47.6 NC_001973.1 + 21734 0.66 0.999808
Target:  5'- cGUCGCCGgacaaGACGCAuauGGcgCGc -3'
miRNA:   3'- -UAGCGGCaaaugCUGCGUuu-CUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 10806 0.66 0.999808
Target:  5'- -gCGCCG---ACGGCGgcGAGAAUCGc -3'
miRNA:   3'- uaGCGGCaaaUGCUGCguUUCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 92119 0.66 0.999808
Target:  5'- aAUCGaCCGgucUUGCGAauCGUAGgcAGAAUCGu -3'
miRNA:   3'- -UAGC-GGCa--AAUGCU--GCGUU--UCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 51661 0.66 0.999808
Target:  5'- -cCGCCG---AgGACGCGGAGGcgCGc -3'
miRNA:   3'- uaGCGGCaaaUgCUGCGUUUCUuaGC- -5'
8070 5' -47.6 NC_001973.1 + 95420 0.66 0.999754
Target:  5'- -cCGCUGcuggGCGACGCGGAGcg-CGa -3'
miRNA:   3'- uaGCGGCaaa-UGCUGCGUUUCuuaGC- -5'
8070 5' -47.6 NC_001973.1 + 32572 0.66 0.999748
Target:  5'- -cCGCCGUcggcucgGCgcgcugcgacacgGACGCGAAGGAUCc -3'
miRNA:   3'- uaGCGGCAaa-----UG-------------CUGCGUUUCUUAGc -5'
8070 5' -47.6 NC_001973.1 + 145025 0.66 0.999687
Target:  5'- -gCGCCcgagUGCGGCGCGAGcGcGUCGa -3'
miRNA:   3'- uaGCGGcaa-AUGCUGCGUUU-CuUAGC- -5'
8070 5' -47.6 NC_001973.1 + 32428 0.66 0.999679
Target:  5'- cGUUGCCGUccUGCGagaauugGCGCGuGGGAUUGg -3'
miRNA:   3'- -UAGCGGCAa-AUGC-------UGCGUuUCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 138290 0.67 0.999604
Target:  5'- -aCGCCGUUgua-GCGCAGAcAGUCGa -3'
miRNA:   3'- uaGCGGCAAaugcUGCGUUUcUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 55425 0.67 0.999536
Target:  5'- uUCGUCGgcggcggcgggcccgACGGCGCGgcGGAUCGu -3'
miRNA:   3'- uAGCGGCaaa------------UGCUGCGUuuCUUAGC- -5'
8070 5' -47.6 NC_001973.1 + 31925 0.67 0.999503
Target:  5'- cGUUGCCGg-UugGACGCGcGGAAaggCGa -3'
miRNA:   3'- -UAGCGGCaaAugCUGCGUuUCUUa--GC- -5'
8070 5' -47.6 NC_001973.1 + 81937 0.67 0.999503
Target:  5'- aAUCGgCGUc--CGGCGCGGAGAAgCGc -3'
miRNA:   3'- -UAGCgGCAaauGCUGCGUUUCUUaGC- -5'
8070 5' -47.6 NC_001973.1 + 57214 0.67 0.999503
Target:  5'- --gGCCGUcgACGACGUcGAG-GUCGc -3'
miRNA:   3'- uagCGGCAaaUGCUGCGuUUCuUAGC- -5'
8070 5' -47.6 NC_001973.1 + 146517 0.67 0.999381
Target:  5'- gAUCGUCGg--GCa--GCAGAGggUCGa -3'
miRNA:   3'- -UAGCGGCaaaUGcugCGUUUCuuAGC- -5'
8070 5' -47.6 NC_001973.1 + 39268 0.67 0.999381
Target:  5'- cGUCGCCGUc-GCGGCGCAGc------ -3'
miRNA:   3'- -UAGCGGCAaaUGCUGCGUUucuuagc -5'
8070 5' -47.6 NC_001973.1 + 136587 0.67 0.999381
Target:  5'- -gCGCCGgc-GCGACGCucAGcucGUCGg -3'
miRNA:   3'- uaGCGGCaaaUGCUGCGuuUCu--UAGC- -5'
8070 5' -47.6 NC_001973.1 + 108749 0.67 0.999233
Target:  5'- cUCGUCGac-GCGGCGCGGGGGAg-- -3'
miRNA:   3'- uAGCGGCaaaUGCUGCGUUUCUUagc -5'
8070 5' -47.6 NC_001973.1 + 57929 0.67 0.999056
Target:  5'- gGUCGCCGUacACGACGUggGcGA-CGg -3'
miRNA:   3'- -UAGCGGCAaaUGCUGCGuuUcUUaGC- -5'
8070 5' -47.6 NC_001973.1 + 35446 0.68 0.998845
Target:  5'- gGUCGUCGacgaggcgGCGGCGCAGAccGUCGc -3'
miRNA:   3'- -UAGCGGCaaa-----UGCUGCGUUUcuUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.