miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 35159 0.72 0.129833
Target:  5'- cCCGGCuucugaGUUCGCCGucaGCGcCCCGGUAc -3'
miRNA:   3'- -GGCCG------CAGGCGGCug-UGCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 35466 0.74 0.096312
Target:  5'- aCUGGCGUCCGCagcaaCGGCGuuCGGCCUGGg- -3'
miRNA:   3'- -GGCCGCAGGCG-----GCUGU--GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 18107 0.77 0.058487
Target:  5'- uCCGGCGccgaCGCUGACGguUGGCCCGGUAa -3'
miRNA:   3'- -GGCCGCag--GCGGCUGU--GCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 19421 0.78 0.048058
Target:  5'- gUCGGCGUCCGUCGGgACGuagcgcuccgauGCCCGGUu -3'
miRNA:   3'- -GGCCGCAGGCGGCUgUGC------------UGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 1812 1.08 0.000259
Target:  5'- uCCGGCGUCCGCCGACACGACCCGGUAa -3'
miRNA:   3'- -GGCCGCAGGCGGCUGUGCUGGGCCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.