Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8073 | 3' | -61.8 | NC_001978.2 | + | 29048 | 0.68 | 0.254963 |
Target: 5'- cCCGuGCGgUCGCCGAgUAUGACCgGGUc -3' miRNA: 3'- -GGC-CGCaGGCGGCU-GUGCUGGgCCAu -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 3383 | 0.68 | 0.248705 |
Target: 5'- uCCGGCGaagaCCGUCGAcCAUGACCauGUGa -3' miRNA: 3'- -GGCCGCa---GGCGGCU-GUGCUGGgcCAU- -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 26053 | 0.68 | 0.241968 |
Target: 5'- aCGGCGUCgugcaGUCGGCugGggaacuuGCCCGGg- -3' miRNA: 3'- gGCCGCAGg----CGGCUGugC-------UGGGCCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 36827 | 0.68 | 0.241363 |
Target: 5'- uCCGGCGUCgGCUccggaagGACguccugaACGGCCUGGg- -3' miRNA: 3'- -GGCCGCAGgCGG-------CUG-------UGCUGGGCCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 37922 | 0.68 | 0.240759 |
Target: 5'- aCGGCGcccCCGCCGACAaggGGCacuucgccccacguCCGGUAg -3' miRNA: 3'- gGCCGCa--GGCGGCUGUg--CUG--------------GGCCAU- -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 30493 | 0.69 | 0.224933 |
Target: 5'- gUCGGCGUCCgcguucucaGCCGACGUGACCUuGUc -3' miRNA: 3'- -GGCCGCAGG---------CGGCUGUGCUGGGcCAu -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 4540 | 0.69 | 0.213787 |
Target: 5'- aCGGUcUUCGCCGACucgcaGCGugCCGGa- -3' miRNA: 3'- gGCCGcAGGCGGCUG-----UGCugGGCCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 31338 | 0.69 | 0.213787 |
Target: 5'- gUCGGCGUUgGCCGugACGaACUCGa-- -3' miRNA: 3'- -GGCCGCAGgCGGCugUGC-UGGGCcau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 27280 | 0.69 | 0.208393 |
Target: 5'- aCCGGCGagCGCaucgGACGuCG-CCCGGUAc -3' miRNA: 3'- -GGCCGCagGCGg---CUGU-GCuGGGCCAU- -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 9003 | 0.69 | 0.236569 |
Target: 5'- gUGGCGcuaucgCCGUCGGCAUuGGCgCCGGUAu -3' miRNA: 3'- gGCCGCa-----GGCGGCUGUG-CUG-GGCCAU- -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 5122 | 0.69 | 0.235975 |
Target: 5'- uCCGGCGcucagcguUCCGCCGACcacgacgACGACgCCGu-- -3' miRNA: 3'- -GGCCGC--------AGGCGGCUG-------UGCUG-GGCcau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 11652 | 0.69 | 0.208393 |
Target: 5'- aCCGGC----GCCGG-ACGACCCGGUAa -3' miRNA: 3'- -GGCCGcaggCGGCUgUGCUGGGCCAU- -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 18108 | 0.7 | 0.197959 |
Target: 5'- gUCGGCGUUCGUCcACugGgcACCCGGa- -3' miRNA: 3'- -GGCCGCAGGCGGcUGugC--UGGGCCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 20473 | 0.7 | 0.192914 |
Target: 5'- uUCGGCGacgucggCCGaCCGGCGCGACUCGa-- -3' miRNA: 3'- -GGCCGCa------GGC-GGCUGUGCUGGGCcau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 32239 | 0.7 | 0.192914 |
Target: 5'- gCGcGCGUCCGUCGAUAcccgucCGcCCCGGUc -3' miRNA: 3'- gGC-CGCAGGCGGCUGU------GCuGGGCCAu -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 4169 | 0.7 | 0.181738 |
Target: 5'- uCCGGCucUUCGCCGACuucgcccagguucaGCGgcACCCGGUAc -3' miRNA: 3'- -GGCCGc-AGGCGGCUG--------------UGC--UGGGCCAU- -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 5453 | 0.7 | 0.178452 |
Target: 5'- cUCGGcCGUCuCGCCGACAau-CCCGGc- -3' miRNA: 3'- -GGCC-GCAG-GCGGCUGUgcuGGGCCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 29380 | 0.7 | 0.192914 |
Target: 5'- uUCGGCGUgcccgucgUCGCCGACGCuGACCUaGGg- -3' miRNA: 3'- -GGCCGCA--------GGCGGCUGUG-CUGGG-CCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 10878 | 0.7 | 0.177987 |
Target: 5'- aCCGGCGUCCGgguggacCCGuguuggcgaGCGUGGCCCGGa- -3' miRNA: 3'- -GGCCGCAGGC-------GGC---------UGUGCUGGGCCau -5' |
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8073 | 3' | -61.8 | NC_001978.2 | + | 25798 | 0.71 | 0.172489 |
Target: 5'- aCGGCGUCauaGCCGACcgauacggcagugaGCGcgucGCCCGGa- -3' miRNA: 3'- gGCCGCAGg--CGGCUG--------------UGC----UGGGCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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