miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 19534 0.67 0.281294
Target:  5'- aCCGGCG-CCGaCCacauCACG-CCCGGg- -3'
miRNA:   3'- -GGCCGCaGGC-GGcu--GUGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 20473 0.7 0.192914
Target:  5'- uUCGGCGacgucggCCGaCCGGCGCGACUCGa-- -3'
miRNA:   3'- -GGCCGCa------GGC-GGCUGUGCUGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 22617 0.66 0.356412
Target:  5'- aCCGGCacUCaG-CGACGCG-CCCGGUAg -3'
miRNA:   3'- -GGCCGc-AGgCgGCUGUGCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 25798 0.71 0.172489
Target:  5'- aCGGCGUCauaGCCGACcgauacggcagugaGCGcgucGCCCGGa- -3'
miRNA:   3'- gGCCGCAGg--CGGCUG--------------UGC----UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 26053 0.68 0.241968
Target:  5'- aCGGCGUCgugcaGUCGGCugGggaacuuGCCCGGg- -3'
miRNA:   3'- gGCCGCAGg----CGGCUGugC-------UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 27280 0.69 0.208393
Target:  5'- aCCGGCGagCGCaucgGACGuCG-CCCGGUAc -3'
miRNA:   3'- -GGCCGCagGCGg---CUGU-GCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 29048 0.68 0.254963
Target:  5'- cCCGuGCGgUCGCCGAgUAUGACCgGGUc -3'
miRNA:   3'- -GGC-CGCaGGCGGCU-GUGCUGGgCCAu -5'
8073 3' -61.8 NC_001978.2 + 29380 0.7 0.192914
Target:  5'- uUCGGCGUgcccgucgUCGCCGACGCuGACCUaGGg- -3'
miRNA:   3'- -GGCCGCA--------GGCGGCUGUG-CUGGG-CCau -5'
8073 3' -61.8 NC_001978.2 + 30493 0.69 0.224933
Target:  5'- gUCGGCGUCCgcguucucaGCCGACGUGACCUuGUc -3'
miRNA:   3'- -GGCCGCAGG---------CGGCUGUGCUGGGcCAu -5'
8073 3' -61.8 NC_001978.2 + 31338 0.69 0.213787
Target:  5'- gUCGGCGUUgGCCGugACGaACUCGa-- -3'
miRNA:   3'- -GGCCGCAGgCGGCugUGC-UGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 32239 0.7 0.192914
Target:  5'- gCGcGCGUCCGUCGAUAcccgucCGcCCCGGUc -3'
miRNA:   3'- gGC-CGCAGGCGGCUGU------GCuGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 32347 0.68 0.254963
Target:  5'- aCGGCGcgugaacguccgUCCGCUgGGCGucgUGACCCGGUc -3'
miRNA:   3'- gGCCGC------------AGGCGG-CUGU---GCUGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 32358 0.67 0.302427
Target:  5'- --aGCGUCCGCCGA-ACGGCUCGa-- -3'
miRNA:   3'- ggcCGCAGGCGGCUgUGCUGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 32471 0.66 0.364656
Target:  5'- aCGGUG-CCGacucgaCCGACugACGACCUGGg- -3'
miRNA:   3'- gGCCGCaGGC------GGCUG--UGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 32713 0.66 0.373031
Target:  5'- -gGGCGUCagcgucaGUCGGC-CGGuCCCGGUu -3'
miRNA:   3'- ggCCGCAGg------CGGCUGuGCU-GGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 33872 0.66 0.373031
Target:  5'- aCCGuGCGcguguaCGCCGACgACGACCCu--- -3'
miRNA:   3'- -GGC-CGCag----GCGGCUG-UGCUGGGccau -5'
8073 3' -61.8 NC_001978.2 + 34136 0.66 0.332474
Target:  5'- cCCGgguguGCGUCCGCCGGaGCGugCCcacGUGg -3'
miRNA:   3'- -GGC-----CGCAGGCGGCUgUGCugGGc--CAU- -5'
8073 3' -61.8 NC_001978.2 + 35159 0.72 0.129833
Target:  5'- cCCGGCuucugaGUUCGCCGucaGCGcCCCGGUAc -3'
miRNA:   3'- -GGCCG------CAGGCGGCug-UGCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 35466 0.74 0.096312
Target:  5'- aCUGGCGUCCGCagcaaCGGCGuuCGGCCUGGg- -3'
miRNA:   3'- -GGCCGCAGGCG-----GCUGU--GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 35581 0.66 0.3483
Target:  5'- aCGGCGcCCcugagcGUCGGCGCGAccgaagacCCCGGg- -3'
miRNA:   3'- gGCCGCaGG------CGGCUGUGCU--------GGGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.