miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 740 0.66 0.356412
Target:  5'- uUGGCGUaggCGCCGAaggugaagccgACGAgCCGGUAa -3'
miRNA:   3'- gGCCGCAg--GCGGCUg----------UGCUgGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 1812 1.08 0.000259
Target:  5'- uCCGGCGUCCGCCGACACGACCCGGUAa -3'
miRNA:   3'- -GGCCGCAGGCGGCUGUGCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 2430 0.66 0.3483
Target:  5'- gCGGaCGUCCGCCauaGGCACGcGCCaauGGg- -3'
miRNA:   3'- gGCC-GCAGGCGG---CUGUGC-UGGg--CCau -5'
8073 3' -61.8 NC_001978.2 + 3383 0.68 0.248705
Target:  5'- uCCGGCGaagaCCGUCGAcCAUGACCauGUGa -3'
miRNA:   3'- -GGCCGCa---GGCGGCU-GUGCUGGgcCAU- -5'
8073 3' -61.8 NC_001978.2 + 4169 0.7 0.181738
Target:  5'- uCCGGCucUUCGCCGACuucgcccagguucaGCGgcACCCGGUAc -3'
miRNA:   3'- -GGCCGc-AGGCGGCUG--------------UGC--UGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 4540 0.69 0.213787
Target:  5'- aCGGUcUUCGCCGACucgcaGCGugCCGGa- -3'
miRNA:   3'- gGCCGcAGGCGGCUG-----UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 5122 0.69 0.235975
Target:  5'- uCCGGCGcucagcguUCCGCCGACcacgacgACGACgCCGu-- -3'
miRNA:   3'- -GGCCGC--------AGGCGGCUG-------UGCUG-GGCcau -5'
8073 3' -61.8 NC_001978.2 + 5453 0.7 0.178452
Target:  5'- cUCGGcCGUCuCGCCGACAau-CCCGGc- -3'
miRNA:   3'- -GGCC-GCAG-GCGGCUGUgcuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 7191 0.67 0.288206
Target:  5'- uCCGGCgGUCagCGCgGGCAgucugcauacCGGCCCGGa- -3'
miRNA:   3'- -GGCCG-CAG--GCGgCUGU----------GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 7962 0.67 0.29525
Target:  5'- gCgGGCGUCaCGCCGu--CG-CCCGGg- -3'
miRNA:   3'- -GgCCGCAG-GCGGCuguGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 9003 0.69 0.236569
Target:  5'- gUGGCGcuaucgCCGUCGGCAUuGGCgCCGGUAu -3'
miRNA:   3'- gGCCGCa-----GGCGGCUGUG-CUG-GGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 10696 0.66 0.353965
Target:  5'- aCCGGCGcUgagcaacgacgacgCUGCCGACaggauGCGACCgGGa- -3'
miRNA:   3'- -GGCCGC-A--------------GGCGGCUG-----UGCUGGgCCau -5'
8073 3' -61.8 NC_001978.2 + 10878 0.7 0.177987
Target:  5'- aCCGGCGUCCGgguggacCCGuguuggcgaGCGUGGCCCGGa- -3'
miRNA:   3'- -GGCCGCAGGC-------GGC---------UGUGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 11048 0.67 0.309738
Target:  5'- gCGGaCGUCU-CCGGCGUGAUCCGGUu -3'
miRNA:   3'- gGCC-GCAGGcGGCUGUGCUGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 11652 0.69 0.208393
Target:  5'- aCCGGC----GCCGG-ACGACCCGGUAa -3'
miRNA:   3'- -GGCCGcaggCGGCUgUGCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 17530 0.66 0.324761
Target:  5'- gCGGC-UCCGUCucCGcCGACCCGGa- -3'
miRNA:   3'- gGCCGcAGGCGGcuGU-GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 17841 0.68 0.261351
Target:  5'- uCCGGCaaggaCGCUGACgGCGugCCGGg- -3'
miRNA:   3'- -GGCCGcag--GCGGCUG-UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 18107 0.77 0.058487
Target:  5'- uCCGGCGccgaCGCUGACGguUGGCCCGGUAa -3'
miRNA:   3'- -GGCCGCag--GCGGCUGU--GCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 18108 0.7 0.197959
Target:  5'- gUCGGCGUUCGUCcACugGgcACCCGGa- -3'
miRNA:   3'- -GGCCGCAGGCGGcUGugC--UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 19421 0.78 0.048058
Target:  5'- gUCGGCGUCCGUCGGgACGuagcgcuccgauGCCCGGUu -3'
miRNA:   3'- -GGCCGCAGGCGGCUgUGC------------UGGGCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.