miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 22617 0.66 0.356412
Target:  5'- aCCGGCacUCaG-CGACGCG-CCCGGUAg -3'
miRNA:   3'- -GGCCGc-AGgCgGCUGUGCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 32358 0.67 0.302427
Target:  5'- --aGCGUCCGCCGA-ACGGCUCGa-- -3'
miRNA:   3'- ggcCGCAGGCGGCUgUGCUGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 11048 0.67 0.309738
Target:  5'- gCGGaCGUCU-CCGGCGUGAUCCGGUu -3'
miRNA:   3'- gGCC-GCAGGcGGCUGUGCUGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 17530 0.66 0.324761
Target:  5'- gCGGC-UCCGUCucCGcCGACCCGGa- -3'
miRNA:   3'- gGCCGcAGGCGGcuGU-GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 34136 0.66 0.332474
Target:  5'- cCCGgguguGCGUCCGCCGGaGCGugCCcacGUGg -3'
miRNA:   3'- -GGC-----CGCAGGCGGCUgUGCugGGc--CAU- -5'
8073 3' -61.8 NC_001978.2 + 35993 0.66 0.332474
Target:  5'- cCCGGaGaCUGCCG-C-CGACCCGGg- -3'
miRNA:   3'- -GGCCgCaGGCGGCuGuGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 35581 0.66 0.3483
Target:  5'- aCGGCGcCCcugagcGUCGGCGCGAccgaagacCCCGGg- -3'
miRNA:   3'- gGCCGCaGG------CGGCUGUGCU--------GGGCCau -5'
8073 3' -61.8 NC_001978.2 + 38588 0.66 0.356412
Target:  5'- gUCGGCGUUCGggaCGGCggaGCG-CCCGGa- -3'
miRNA:   3'- -GGCCGCAGGCg--GCUG---UGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 740 0.66 0.356412
Target:  5'- uUGGCGUaggCGCCGAaggugaagccgACGAgCCGGUAa -3'
miRNA:   3'- gGCCGCAg--GCGGCUg----------UGCUgGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 19534 0.67 0.281294
Target:  5'- aCCGGCG-CCGaCCacauCACG-CCCGGg- -3'
miRNA:   3'- -GGCCGCaGGC-GGcu--GUGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 38367 0.67 0.279247
Target:  5'- -gGGCGUagggUCGCCGACAUGACacaagggguugugaCCGGg- -3'
miRNA:   3'- ggCCGCA----GGCGGCUGUGCUG--------------GGCCau -5'
8073 3' -61.8 NC_001978.2 + 17841 0.68 0.261351
Target:  5'- uCCGGCaaggaCGCUGACgGCGugCCGGg- -3'
miRNA:   3'- -GGCCGcag--GCGGCUG-UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 35466 0.74 0.096312
Target:  5'- aCUGGCGUCCGCagcaaCGGCGuuCGGCCUGGg- -3'
miRNA:   3'- -GGCCGCAGGCG-----GCUGU--GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 35159 0.72 0.129833
Target:  5'- cCCGGCuucugaGUUCGCCGucaGCGcCCCGGUAc -3'
miRNA:   3'- -GGCCG------CAGGCGGCug-UGCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 10878 0.7 0.177987
Target:  5'- aCCGGCGUCCGgguggacCCGuguuggcgaGCGUGGCCCGGa- -3'
miRNA:   3'- -GGCCGCAGGC-------GGC---------UGUGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 29380 0.7 0.192914
Target:  5'- uUCGGCGUgcccgucgUCGCCGACGCuGACCUaGGg- -3'
miRNA:   3'- -GGCCGCA--------GGCGGCUGUG-CUGGG-CCau -5'
8073 3' -61.8 NC_001978.2 + 11652 0.69 0.208393
Target:  5'- aCCGGC----GCCGG-ACGACCCGGUAa -3'
miRNA:   3'- -GGCCGcaggCGGCUgUGCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 5122 0.69 0.235975
Target:  5'- uCCGGCGcucagcguUCCGCCGACcacgacgACGACgCCGu-- -3'
miRNA:   3'- -GGCCGC--------AGGCGGCUG-------UGCUG-GGCcau -5'
8073 3' -61.8 NC_001978.2 + 9003 0.69 0.236569
Target:  5'- gUGGCGcuaucgCCGUCGGCAUuGGCgCCGGUAu -3'
miRNA:   3'- gGCCGCa-----GGCGGCUGUG-CUG-GGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 29048 0.68 0.254963
Target:  5'- cCCGuGCGgUCGCCGAgUAUGACCgGGUc -3'
miRNA:   3'- -GGC-CGCaGGCGGCU-GUGCUGGgCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.