miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 9003 0.69 0.236569
Target:  5'- gUGGCGcuaucgCCGUCGGCAUuGGCgCCGGUAu -3'
miRNA:   3'- gGCCGCa-----GGCGGCUGUG-CUG-GGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 29048 0.68 0.254963
Target:  5'- cCCGuGCGgUCGCCGAgUAUGACCgGGUc -3'
miRNA:   3'- -GGC-CGCaGGCGGCU-GUGCUGGgCCAu -5'
8073 3' -61.8 NC_001978.2 + 17841 0.68 0.261351
Target:  5'- uCCGGCaaggaCGCUGACgGCGugCCGGg- -3'
miRNA:   3'- -GGCCGcag--GCGGCUG-UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 30493 0.69 0.224933
Target:  5'- gUCGGCGUCCgcguucucaGCCGACGUGACCUuGUc -3'
miRNA:   3'- -GGCCGCAGG---------CGGCUGUGCUGGGcCAu -5'
8073 3' -61.8 NC_001978.2 + 4540 0.69 0.213787
Target:  5'- aCGGUcUUCGCCGACucgcaGCGugCCGGa- -3'
miRNA:   3'- gGCCGcAGGCGGCUG-----UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 31338 0.69 0.213787
Target:  5'- gUCGGCGUUgGCCGugACGaACUCGa-- -3'
miRNA:   3'- -GGCCGCAGgCGGCugUGC-UGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 27280 0.69 0.208393
Target:  5'- aCCGGCGagCGCaucgGACGuCG-CCCGGUAc -3'
miRNA:   3'- -GGCCGCagGCGg---CUGU-GCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 18108 0.7 0.197959
Target:  5'- gUCGGCGUUCGUCcACugGgcACCCGGa- -3'
miRNA:   3'- -GGCCGCAGGCGGcUGugC--UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 20473 0.7 0.192914
Target:  5'- uUCGGCGacgucggCCGaCCGGCGCGACUCGa-- -3'
miRNA:   3'- -GGCCGCa------GGC-GGCUGUGCUGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 32239 0.7 0.192914
Target:  5'- gCGcGCGUCCGUCGAUAcccgucCGcCCCGGUc -3'
miRNA:   3'- gGC-CGCAGGCGGCUGU------GCuGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 37922 0.68 0.240759
Target:  5'- aCGGCGcccCCGCCGACAaggGGCacuucgccccacguCCGGUAg -3'
miRNA:   3'- gGCCGCa--GGCGGCUGUg--CUG--------------GGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 36827 0.68 0.241363
Target:  5'- uCCGGCGUCgGCUccggaagGACguccugaACGGCCUGGg- -3'
miRNA:   3'- -GGCCGCAGgCGG-------CUG-------UGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 26053 0.68 0.241968
Target:  5'- aCGGCGUCgugcaGUCGGCugGggaacuuGCCCGGg- -3'
miRNA:   3'- gGCCGCAGg----CGGCUGugC-------UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 3383 0.68 0.248705
Target:  5'- uCCGGCGaagaCCGUCGAcCAUGACCauGUGa -3'
miRNA:   3'- -GGCCGCa---GGCGGCU-GUGCUGGgcCAU- -5'
8073 3' -61.8 NC_001978.2 + 32347 0.68 0.254963
Target:  5'- aCGGCGcgugaacguccgUCCGCUgGGCGucgUGACCCGGUc -3'
miRNA:   3'- gGCCGC------------AGGCGG-CUGU---GCUGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 7191 0.67 0.288206
Target:  5'- uCCGGCgGUCagCGCgGGCAgucugcauacCGGCCCGGa- -3'
miRNA:   3'- -GGCCG-CAG--GCGgCUGU----------GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 7962 0.67 0.29525
Target:  5'- gCgGGCGUCaCGCCGu--CG-CCCGGg- -3'
miRNA:   3'- -GgCCGCAG-GCGGCuguGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 2430 0.66 0.3483
Target:  5'- gCGGaCGUCCGCCauaGGCACGcGCCaauGGg- -3'
miRNA:   3'- gGCC-GCAGGCGG---CUGUGC-UGGg--CCau -5'
8073 3' -61.8 NC_001978.2 + 10696 0.66 0.353965
Target:  5'- aCCGGCGcUgagcaacgacgacgCUGCCGACaggauGCGACCgGGa- -3'
miRNA:   3'- -GGCCGC-A--------------GGCGGCUG-----UGCUGGgCCau -5'
8073 3' -61.8 NC_001978.2 + 1812 1.08 0.000259
Target:  5'- uCCGGCGUCCGCCGACACGACCCGGUAa -3'
miRNA:   3'- -GGCCGCAGGCGGCUGUGCUGGGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.