miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 37922 0.68 0.240759
Target:  5'- aCGGCGcccCCGCCGACAaggGGCacuucgccccacguCCGGUAg -3'
miRNA:   3'- gGCCGCa--GGCGGCUGUg--CUG--------------GGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 36827 0.68 0.241363
Target:  5'- uCCGGCGUCgGCUccggaagGACguccugaACGGCCUGGg- -3'
miRNA:   3'- -GGCCGCAGgCGG-------CUG-------UGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 26053 0.68 0.241968
Target:  5'- aCGGCGUCgugcaGUCGGCugGggaacuuGCCCGGg- -3'
miRNA:   3'- gGCCGCAGg----CGGCUGugC-------UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 3383 0.68 0.248705
Target:  5'- uCCGGCGaagaCCGUCGAcCAUGACCauGUGa -3'
miRNA:   3'- -GGCCGCa---GGCGGCU-GUGCUGGgcCAU- -5'
8073 3' -61.8 NC_001978.2 + 32347 0.68 0.254963
Target:  5'- aCGGCGcgugaacguccgUCCGCUgGGCGucgUGACCCGGUc -3'
miRNA:   3'- gGCCGC------------AGGCGG-CUGU---GCUGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 29048 0.68 0.254963
Target:  5'- cCCGuGCGgUCGCCGAgUAUGACCgGGUc -3'
miRNA:   3'- -GGC-CGCaGGCGGCU-GUGCUGGgCCAu -5'
8073 3' -61.8 NC_001978.2 + 17841 0.68 0.261351
Target:  5'- uCCGGCaaggaCGCUGACgGCGugCCGGg- -3'
miRNA:   3'- -GGCCGcag--GCGGCUG-UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 38367 0.67 0.279247
Target:  5'- -gGGCGUagggUCGCCGACAUGACacaagggguugugaCCGGg- -3'
miRNA:   3'- ggCCGCA----GGCGGCUGUGCUG--------------GGCCau -5'
8073 3' -61.8 NC_001978.2 + 19534 0.67 0.281294
Target:  5'- aCCGGCG-CCGaCCacauCACG-CCCGGg- -3'
miRNA:   3'- -GGCCGCaGGC-GGcu--GUGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 7191 0.67 0.288206
Target:  5'- uCCGGCgGUCagCGCgGGCAgucugcauacCGGCCCGGa- -3'
miRNA:   3'- -GGCCG-CAG--GCGgCUGU----------GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 7962 0.67 0.29525
Target:  5'- gCgGGCGUCaCGCCGu--CG-CCCGGg- -3'
miRNA:   3'- -GgCCGCAG-GCGGCuguGCuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 32358 0.67 0.302427
Target:  5'- --aGCGUCCGCCGA-ACGGCUCGa-- -3'
miRNA:   3'- ggcCGCAGGCGGCUgUGCUGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 11048 0.67 0.309738
Target:  5'- gCGGaCGUCU-CCGGCGUGAUCCGGUu -3'
miRNA:   3'- gGCC-GCAGGcGGCUGUGCUGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 17530 0.66 0.324761
Target:  5'- gCGGC-UCCGUCucCGcCGACCCGGa- -3'
miRNA:   3'- gGCCGcAGGCGGcuGU-GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 35993 0.66 0.332474
Target:  5'- cCCGGaGaCUGCCG-C-CGACCCGGg- -3'
miRNA:   3'- -GGCCgCaGGCGGCuGuGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 34136 0.66 0.332474
Target:  5'- cCCGgguguGCGUCCGCCGGaGCGugCCcacGUGg -3'
miRNA:   3'- -GGC-----CGCAGGCGGCUgUGCugGGc--CAU- -5'
8073 3' -61.8 NC_001978.2 + 2430 0.66 0.3483
Target:  5'- gCGGaCGUCCGCCauaGGCACGcGCCaauGGg- -3'
miRNA:   3'- gGCC-GCAGGCGG---CUGUGC-UGGg--CCau -5'
8073 3' -61.8 NC_001978.2 + 35581 0.66 0.3483
Target:  5'- aCGGCGcCCcugagcGUCGGCGCGAccgaagacCCCGGg- -3'
miRNA:   3'- gGCCGCaGG------CGGCUGUGCU--------GGGCCau -5'
8073 3' -61.8 NC_001978.2 + 10696 0.66 0.353965
Target:  5'- aCCGGCGcUgagcaacgacgacgCUGCCGACaggauGCGACCgGGa- -3'
miRNA:   3'- -GGCCGC-A--------------GGCGGCUG-----UGCUGGgCCau -5'
8073 3' -61.8 NC_001978.2 + 38588 0.66 0.356412
Target:  5'- gUCGGCGUUCGggaCGGCggaGCG-CCCGGa- -3'
miRNA:   3'- -GGCCGCAGGCg--GCUG---UGCuGGGCCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.