miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8073 3' -61.8 NC_001978.2 + 1812 1.08 0.000259
Target:  5'- uCCGGCGUCCGCCGACACGACCCGGUAa -3'
miRNA:   3'- -GGCCGCAGGCGGCUGUGCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 19421 0.78 0.048058
Target:  5'- gUCGGCGUCCGUCGGgACGuagcgcuccgauGCCCGGUu -3'
miRNA:   3'- -GGCCGCAGGCGGCUgUGC------------UGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 18107 0.77 0.058487
Target:  5'- uCCGGCGccgaCGCUGACGguUGGCCCGGUAa -3'
miRNA:   3'- -GGCCGCag--GCGGCUGU--GCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 35466 0.74 0.096312
Target:  5'- aCUGGCGUCCGCagcaaCGGCGuuCGGCCUGGg- -3'
miRNA:   3'- -GGCCGCAGGCG-----GCUGU--GCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 35159 0.72 0.129833
Target:  5'- cCCGGCuucugaGUUCGCCGucaGCGcCCCGGUAc -3'
miRNA:   3'- -GGCCG------CAGGCGGCug-UGCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 25798 0.71 0.172489
Target:  5'- aCGGCGUCauaGCCGACcgauacggcagugaGCGcgucGCCCGGa- -3'
miRNA:   3'- gGCCGCAGg--CGGCUG--------------UGC----UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 10878 0.7 0.177987
Target:  5'- aCCGGCGUCCGgguggacCCGuguuggcgaGCGUGGCCCGGa- -3'
miRNA:   3'- -GGCCGCAGGC-------GGC---------UGUGCUGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 5453 0.7 0.178452
Target:  5'- cUCGGcCGUCuCGCCGACAau-CCCGGc- -3'
miRNA:   3'- -GGCC-GCAG-GCGGCUGUgcuGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 4169 0.7 0.181738
Target:  5'- uCCGGCucUUCGCCGACuucgcccagguucaGCGgcACCCGGUAc -3'
miRNA:   3'- -GGCCGc-AGGCGGCUG--------------UGC--UGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 20473 0.7 0.192914
Target:  5'- uUCGGCGacgucggCCGaCCGGCGCGACUCGa-- -3'
miRNA:   3'- -GGCCGCa------GGC-GGCUGUGCUGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 32239 0.7 0.192914
Target:  5'- gCGcGCGUCCGUCGAUAcccgucCGcCCCGGUc -3'
miRNA:   3'- gGC-CGCAGGCGGCUGU------GCuGGGCCAu -5'
8073 3' -61.8 NC_001978.2 + 29380 0.7 0.192914
Target:  5'- uUCGGCGUgcccgucgUCGCCGACGCuGACCUaGGg- -3'
miRNA:   3'- -GGCCGCA--------GGCGGCUGUG-CUGGG-CCau -5'
8073 3' -61.8 NC_001978.2 + 18108 0.7 0.197959
Target:  5'- gUCGGCGUUCGUCcACugGgcACCCGGa- -3'
miRNA:   3'- -GGCCGCAGGCGGcUGugC--UGGGCCau -5'
8073 3' -61.8 NC_001978.2 + 11652 0.69 0.208393
Target:  5'- aCCGGC----GCCGG-ACGACCCGGUAa -3'
miRNA:   3'- -GGCCGcaggCGGCUgUGCUGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 27280 0.69 0.208393
Target:  5'- aCCGGCGagCGCaucgGACGuCG-CCCGGUAc -3'
miRNA:   3'- -GGCCGCagGCGg---CUGU-GCuGGGCCAU- -5'
8073 3' -61.8 NC_001978.2 + 4540 0.69 0.213787
Target:  5'- aCGGUcUUCGCCGACucgcaGCGugCCGGa- -3'
miRNA:   3'- gGCCGcAGGCGGCUG-----UGCugGGCCau -5'
8073 3' -61.8 NC_001978.2 + 31338 0.69 0.213787
Target:  5'- gUCGGCGUUgGCCGugACGaACUCGa-- -3'
miRNA:   3'- -GGCCGCAGgCGGCugUGC-UGGGCcau -5'
8073 3' -61.8 NC_001978.2 + 30493 0.69 0.224933
Target:  5'- gUCGGCGUCCgcguucucaGCCGACGUGACCUuGUc -3'
miRNA:   3'- -GGCCGCAGG---------CGGCUGUGCUGGGcCAu -5'
8073 3' -61.8 NC_001978.2 + 5122 0.69 0.235975
Target:  5'- uCCGGCGcucagcguUCCGCCGACcacgacgACGACgCCGu-- -3'
miRNA:   3'- -GGCCGC--------AGGCGGCUG-------UGCUG-GGCcau -5'
8073 3' -61.8 NC_001978.2 + 9003 0.69 0.236569
Target:  5'- gUGGCGcuaucgCCGUCGGCAUuGGCgCCGGUAu -3'
miRNA:   3'- gGCCGCa-----GGCGGCUGUG-CUG-GGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.