miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 5369 1.12 0.000292
Target:  5'- gGUCGACGCGCCACCGCGCAUGAUCGCg -3'
miRNA:   3'- -CAGCUGCGCGGUGGCGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 25509 0.8 0.069484
Target:  5'- uGUCGACGUcguucGCCcgguucCCGCGCAUGGUCGUu -3'
miRNA:   3'- -CAGCUGCG-----CGGu-----GGCGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 39900 0.78 0.084979
Target:  5'- cGUCGuACGCGCCuGCCGCGCGgucuUCGUa -3'
miRNA:   3'- -CAGC-UGCGCGG-UGGCGCGUacu-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 22319 0.73 0.195913
Target:  5'- cGUCGGCGUcgaGCCAUaCGCGCAUGAccacaUCGa -3'
miRNA:   3'- -CAGCUGCG---CGGUG-GCGCGUACU-----AGCg -5'
8076 3' -57.5 NC_001978.2 + 6749 0.72 0.217914
Target:  5'- gGUCGACGCugaGCgCGCCGUGUAUGGcauUCGg -3'
miRNA:   3'- -CAGCUGCG---CG-GUGGCGCGUACU---AGCg -5'
8076 3' -57.5 NC_001978.2 + 20258 0.72 0.217914
Target:  5'- uGUCGACGUGCCcgugaACgGCGC-UGAUCugaGCg -3'
miRNA:   3'- -CAGCUGCGCGG-----UGgCGCGuACUAG---CG- -5'
8076 3' -57.5 NC_001978.2 + 25719 0.71 0.254844
Target:  5'- -gCGACGCGCuCACUGCcGUAUcGGUCGg -3'
miRNA:   3'- caGCUGCGCG-GUGGCG-CGUA-CUAGCg -5'
8076 3' -57.5 NC_001978.2 + 28893 0.71 0.268249
Target:  5'- cGUCGGCGagcgcuGCCAacaCGCGCAUuucGAUUGCc -3'
miRNA:   3'- -CAGCUGCg-----CGGUg--GCGCGUA---CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 16004 0.71 0.268249
Target:  5'- aGUCGGCGC-CCGUCGCGCccGuGUCGCc -3'
miRNA:   3'- -CAGCUGCGcGGUGGCGCGuaC-UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19956 0.7 0.289414
Target:  5'- -aCGGCGUuCCGgaGCGCGUGaAUCGCg -3'
miRNA:   3'- caGCUGCGcGGUggCGCGUAC-UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 17248 0.7 0.296755
Target:  5'- aGUCGGCGCaCUAcCCGCGCAcGGcuUCGUg -3'
miRNA:   3'- -CAGCUGCGcGGU-GGCGCGUaCU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 28190 0.7 0.319643
Target:  5'- -aCGGCGCGCCugaacCCGUGCcuUGA-CGCc -3'
miRNA:   3'- caGCUGCGCGGu----GGCGCGu-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 24599 0.69 0.343001
Target:  5'- uGUCGGCGUGCUugcccuugccauuACCGCaaugGUGUGcgCGCa -3'
miRNA:   3'- -CAGCUGCGCGG-------------UGGCG----CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 3762 0.69 0.343828
Target:  5'- uUUGGCGUGCCGCCGCaCcUGAUuucggaCGCu -3'
miRNA:   3'- cAGCUGCGCGGUGGCGcGuACUA------GCG- -5'
8076 3' -57.5 NC_001978.2 + 32372 0.69 0.347151
Target:  5'- -gCGugGCGCCuucggcucaguaggcACgGCGCGUGAaCGUc -3'
miRNA:   3'- caGCugCGCGG---------------UGgCGCGUACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 3635 0.69 0.352177
Target:  5'- cGUCGACaaCGCgCACCGCGUAg---CGCu -3'
miRNA:   3'- -CAGCUGc-GCG-GUGGCGCGUacuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 226 0.69 0.352177
Target:  5'- gGUCGA-GCGCCccgugugcCCGCGCAccUGAagGCg -3'
miRNA:   3'- -CAGCUgCGCGGu-------GGCGCGU--ACUagCG- -5'
8076 3' -57.5 NC_001978.2 + 8548 0.69 0.360669
Target:  5'- -cCGAugcuuCGCGCCAUgGCGUAUG-UCGUc -3'
miRNA:   3'- caGCU-----GCGCGGUGgCGCGUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 36566 0.69 0.360669
Target:  5'- gGUCGGCGUGgCA--GUGCAcuUGAUCGCu -3'
miRNA:   3'- -CAGCUGCGCgGUggCGCGU--ACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 17530 0.68 0.386991
Target:  5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3'
miRNA:   3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.