miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 6809 0.66 0.493517
Target:  5'- -aCGGCGCGCuCAgCGuCGaCcgGAUUGCc -3'
miRNA:   3'- caGCUGCGCG-GUgGC-GC-GuaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 15008 0.66 0.493517
Target:  5'- uUCGuCGCGCCAuacguugcCCGUGCcgGuaCGCa -3'
miRNA:   3'- cAGCuGCGCGGU--------GGCGCGuaCuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 32091 0.66 0.493517
Target:  5'- -aCGACGCGCCcCCGCucaGCcUGAagcucCGCc -3'
miRNA:   3'- caGCUGCGCGGuGGCG---CGuACUa----GCG- -5'
8076 3' -57.5 NC_001978.2 + 27742 0.66 0.503882
Target:  5'- uGUUG-CGCGCC-CaGUGCAUGAacucacgaaggUCGCg -3'
miRNA:   3'- -CAGCuGCGCGGuGgCGCGUACU-----------AGCG- -5'
8076 3' -57.5 NC_001978.2 + 13628 0.66 0.503882
Target:  5'- aGUCGACGCcgaACCGgGCGUGuacuUCaGCa -3'
miRNA:   3'- -CAGCUGCGcggUGGCgCGUACu---AG-CG- -5'
8076 3' -57.5 NC_001978.2 + 11523 0.66 0.503882
Target:  5'- gGUCGAgcgGCGCCgACCGCuuGCGUGccCGUg -3'
miRNA:   3'- -CAGCUg--CGCGG-UGGCG--CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 33262 0.66 0.514339
Target:  5'- aGUUGG-GCGCUACgGCGUgaagGUGGUCGa -3'
miRNA:   3'- -CAGCUgCGCGGUGgCGCG----UACUAGCg -5'
8076 3' -57.5 NC_001978.2 + 25344 0.66 0.546211
Target:  5'- -gUGGCGCGCCGguaacCCGacuuCGCAUGuggcuugaGUCGCu -3'
miRNA:   3'- caGCUGCGCGGU-----GGC----GCGUAC--------UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 28833 0.66 0.524884
Target:  5'- uGUUGGCaGCGCuCGCCGa-CGUGAagCGCa -3'
miRNA:   3'- -CAGCUG-CGCG-GUGGCgcGUACUa-GCG- -5'
8076 3' -57.5 NC_001978.2 + 27448 0.66 0.514339
Target:  5'- -cUGACGCGCCuGCCGcCGCuaccGGUCccgGCa -3'
miRNA:   3'- caGCUGCGCGG-UGGC-GCGua--CUAG---CG- -5'
8076 3' -57.5 NC_001978.2 + 12015 0.66 0.502841
Target:  5'- -aUGGCGCGUCucagcuuGCCGacugGCAggUGAUCGCu -3'
miRNA:   3'- caGCUGCGCGG-------UGGCg---CGU--ACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 27051 0.66 0.503882
Target:  5'- uUCG-UGCGCUACuuCGCGCcgGAagagCGCg -3'
miRNA:   3'- cAGCuGCGCGGUG--GCGCGuaCUa---GCG- -5'
8076 3' -57.5 NC_001978.2 + 16675 0.66 0.503882
Target:  5'- -cCGGCGCGCuUGCCGCuaugcggucaacGCAUGucggCGCc -3'
miRNA:   3'- caGCUGCGCG-GUGGCG------------CGUACua--GCG- -5'
8076 3' -57.5 NC_001978.2 + 35329 0.66 0.503882
Target:  5'- -gCGACgGCGCUugU-UGCGUGAUCGUu -3'
miRNA:   3'- caGCUG-CGCGGugGcGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 5708 0.66 0.545137
Target:  5'- aGUCGGCGUcaGCCucACCGaaggcaGCGUuggcgccGGUCGCg -3'
miRNA:   3'- -CAGCUGCG--CGG--UGGCg-----CGUA-------CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 1649 0.66 0.531251
Target:  5'- uGUCGcugaGCGUCGCCccggucgGCuaucaggugguaaaGCAUGAUCGCg -3'
miRNA:   3'- -CAGCug--CGCGGUGG-------CG--------------CGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 21237 0.66 0.513289
Target:  5'- uUCG-CGCuGCCGCCGaCGCGuucgaccuugaccUGAgCGCg -3'
miRNA:   3'- cAGCuGCG-CGGUGGC-GCGU-------------ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 7661 0.67 0.453096
Target:  5'- uUCGuaACGCGCUGCCGaCGUAcGAagGCa -3'
miRNA:   3'- cAGC--UGCGCGGUGGC-GCGUaCUagCG- -5'
8076 3' -57.5 NC_001978.2 + 37398 0.67 0.453096
Target:  5'- aUCGAUaGCGCCGCUGagGCAcUGAcCGCc -3'
miRNA:   3'- cAGCUG-CGCGGUGGCg-CGU-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 22735 0.67 0.463036
Target:  5'- cGUCGGCGUcguguucgucGCUGCCGuCGUcgGGcUCGCc -3'
miRNA:   3'- -CAGCUGCG----------CGGUGGC-GCGuaCU-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.