Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 39846 | 0.67 | 0.483251 |
Target: 5'- cGUCGGCGCGCU-CCGCaaCAaGGuUCGCc -3' miRNA: 3'- -CAGCUGCGCGGuGGCGc-GUaCU-AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 37398 | 0.67 | 0.453096 |
Target: 5'- aUCGAUaGCGCCGCUGagGCAcUGAcCGCc -3' miRNA: 3'- cAGCUG-CGCGGUGGCg-CGU-ACUaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 4970 | 0.67 | 0.443274 |
Target: 5'- cUCG-CGCGCCucaaaguUgGCGCucagaGUGGUCGCg -3' miRNA: 3'- cAGCuGCGCGGu------GgCGCG-----UACUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 34327 | 0.67 | 0.452109 |
Target: 5'- -gCGugGCuccggcaagcuccGCCgACgGCGCAUGAcguaUCGCg -3' miRNA: 3'- caGCugCG-------------CGG-UGgCGCGUACU----AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 9960 | 0.67 | 0.453096 |
Target: 5'- aGUCGACcaacccaGUCugaagACCGCGCGUGAaCGCc -3' miRNA: 3'- -CAGCUGcg-----CGG-----UGGCGCGUACUaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 35595 | 0.67 | 0.443274 |
Target: 5'- cGUCGGCGCGaCCgaagaccccgggACCGUGCccacaAUCGCc -3' miRNA: 3'- -CAGCUGCGC-GG------------UGGCGCGuac--UAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 25913 | 0.67 | 0.443274 |
Target: 5'- aUCGACGCGUa--CGCGC-UGAaCGUg -3' miRNA: 3'- cAGCUGCGCGgugGCGCGuACUaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 1842 | 0.67 | 0.453096 |
Target: 5'- uUCGACGCGCUgacGCUGgGCAgugcCGCc -3' miRNA: 3'- cAGCUGCGCGG---UGGCgCGUacuaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 7661 | 0.67 | 0.453096 |
Target: 5'- uUCGuaACGCGCUGCCGaCGUAcGAagGCa -3' miRNA: 3'- cAGC--UGCGCGGUGGC-GCGUaCUagCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 32189 | 0.68 | 0.423995 |
Target: 5'- --gGACGCGCgCACCGCuGaggGAUgGCg -3' miRNA: 3'- cagCUGCGCG-GUGGCG-CguaCUAgCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 37865 | 0.68 | 0.405227 |
Target: 5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3' miRNA: 3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 33539 | 0.68 | 0.405227 |
Target: 5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3' miRNA: 3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 24490 | 0.68 | 0.39513 |
Target: 5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3' miRNA: 3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 19931 | 0.68 | 0.433572 |
Target: 5'- cGUCGGCccccggcacgGCGCCAauGCGCAc-GUCGCc -3' miRNA: 3'- -CAGCUG----------CGCGGUggCGCGUacUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 38632 | 0.68 | 0.423995 |
Target: 5'- -cCGACGUGCC-CgGCGCu---UCGCu -3' miRNA: 3'- caGCUGCGCGGuGgCGCGuacuAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 12319 | 0.68 | 0.414545 |
Target: 5'- -cCGACGuCGUCAgCCGCGCAacGAUCa- -3' miRNA: 3'- caGCUGC-GCGGU-GGCGCGUa-CUAGcg -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 22696 | 0.68 | 0.414545 |
Target: 5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3' miRNA: 3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 24569 | 0.68 | 0.396041 |
Target: 5'- -cCGACGCGCC-CCGgGuUAUGGcgUUGCu -3' miRNA: 3'- caGCUGCGCGGuGGCgC-GUACU--AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 17530 | 0.68 | 0.386991 |
Target: 5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3' miRNA: 3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 19718 | 0.68 | 0.386991 |
Target: 5'- uGUCGAagGCGUCcUUGCGCG-GGUCGCu -3' miRNA: 3'- -CAGCUg-CGCGGuGGCGCGUaCUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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