Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 16675 | 0.66 | 0.503882 |
Target: 5'- -cCGGCGCGCuUGCCGCuaugcggucaacGCAUGucggCGCc -3' miRNA: 3'- caGCUGCGCG-GUGGCG------------CGUACua--GCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 17248 | 0.7 | 0.296755 |
Target: 5'- aGUCGGCGCaCUAcCCGCGCAcGGcuUCGUg -3' miRNA: 3'- -CAGCUGCGcGGU-GGCGCGUaCU--AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 17530 | 0.68 | 0.386991 |
Target: 5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3' miRNA: 3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 19718 | 0.68 | 0.386991 |
Target: 5'- uGUCGAagGCGUCcUUGCGCG-GGUCGCu -3' miRNA: 3'- -CAGCUg-CGCGGuGGCGCGUaCUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 19931 | 0.68 | 0.433572 |
Target: 5'- cGUCGGCccccggcacgGCGCCAauGCGCAc-GUCGCc -3' miRNA: 3'- -CAGCUG----------CGCGGUggCGCGUacUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 19956 | 0.7 | 0.289414 |
Target: 5'- -aCGGCGUuCCGgaGCGCGUGaAUCGCg -3' miRNA: 3'- caGCUGCGcGGUggCGCGUAC-UAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 20258 | 0.72 | 0.217914 |
Target: 5'- uGUCGACGUGCCcgugaACgGCGC-UGAUCugaGCg -3' miRNA: 3'- -CAGCUGCGCGG-----UGgCGCGuACUAG---CG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 21237 | 0.66 | 0.513289 |
Target: 5'- uUCG-CGCuGCCGCCGaCGCGuucgaccuugaccUGAgCGCg -3' miRNA: 3'- cAGCuGCG-CGGUGGC-GCGU-------------ACUaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 22319 | 0.73 | 0.195913 |
Target: 5'- cGUCGGCGUcgaGCCAUaCGCGCAUGAccacaUCGa -3' miRNA: 3'- -CAGCUGCG---CGGUG-GCGCGUACU-----AGCg -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 22696 | 0.68 | 0.414545 |
Target: 5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3' miRNA: 3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 22735 | 0.67 | 0.463036 |
Target: 5'- cGUCGGCGUcguguucgucGCUGCCGuCGUcgGGcUCGCc -3' miRNA: 3'- -CAGCUGCG----------CGGUGGC-GCGuaCU-AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 24490 | 0.68 | 0.39513 |
Target: 5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3' miRNA: 3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 24569 | 0.68 | 0.396041 |
Target: 5'- -cCGACGCGCC-CCGgGuUAUGGcgUUGCu -3' miRNA: 3'- caGCUGCGCGGuGGCgC-GUACU--AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 24599 | 0.69 | 0.343001 |
Target: 5'- uGUCGGCGUGCUugcccuugccauuACCGCaaugGUGUGcgCGCa -3' miRNA: 3'- -CAGCUGCGCGG-------------UGGCG----CGUACuaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 25344 | 0.66 | 0.546211 |
Target: 5'- -gUGGCGCGCCGguaacCCGacuuCGCAUGuggcuugaGUCGCu -3' miRNA: 3'- caGCUGCGCGGU-----GGC----GCGUAC--------UAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 25509 | 0.8 | 0.069484 |
Target: 5'- uGUCGACGUcguucGCCcgguucCCGCGCAUGGUCGUu -3' miRNA: 3'- -CAGCUGCG-----CGGu-----GGCGCGUACUAGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 25719 | 0.71 | 0.254844 |
Target: 5'- -gCGACGCGCuCACUGCcGUAUcGGUCGg -3' miRNA: 3'- caGCUGCGCG-GUGGCG-CGUA-CUAGCg -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 25913 | 0.67 | 0.443274 |
Target: 5'- aUCGACGCGUa--CGCGC-UGAaCGUg -3' miRNA: 3'- cAGCUGCGCGgugGCGCGuACUaGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 26431 | 0.67 | 0.463036 |
Target: 5'- uUCGACGCGaa--CGCGCAccuguUGAgcuUCGCg -3' miRNA: 3'- cAGCUGCGCggugGCGCGU-----ACU---AGCG- -5' |
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8076 | 3' | -57.5 | NC_001978.2 | + | 27051 | 0.66 | 0.503882 |
Target: 5'- uUCG-UGCGCUACuuCGCGCcgGAagagCGCg -3' miRNA: 3'- cAGCuGCGCGGUG--GCGCGuaCUa---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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