miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 16675 0.66 0.503882
Target:  5'- -cCGGCGCGCuUGCCGCuaugcggucaacGCAUGucggCGCc -3'
miRNA:   3'- caGCUGCGCG-GUGGCG------------CGUACua--GCG- -5'
8076 3' -57.5 NC_001978.2 + 17248 0.7 0.296755
Target:  5'- aGUCGGCGCaCUAcCCGCGCAcGGcuUCGUg -3'
miRNA:   3'- -CAGCUGCGcGGU-GGCGCGUaCU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 17530 0.68 0.386991
Target:  5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3'
miRNA:   3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5'
8076 3' -57.5 NC_001978.2 + 19718 0.68 0.386991
Target:  5'- uGUCGAagGCGUCcUUGCGCG-GGUCGCu -3'
miRNA:   3'- -CAGCUg-CGCGGuGGCGCGUaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19931 0.68 0.433572
Target:  5'- cGUCGGCccccggcacgGCGCCAauGCGCAc-GUCGCc -3'
miRNA:   3'- -CAGCUG----------CGCGGUggCGCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19956 0.7 0.289414
Target:  5'- -aCGGCGUuCCGgaGCGCGUGaAUCGCg -3'
miRNA:   3'- caGCUGCGcGGUggCGCGUAC-UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 20258 0.72 0.217914
Target:  5'- uGUCGACGUGCCcgugaACgGCGC-UGAUCugaGCg -3'
miRNA:   3'- -CAGCUGCGCGG-----UGgCGCGuACUAG---CG- -5'
8076 3' -57.5 NC_001978.2 + 21237 0.66 0.513289
Target:  5'- uUCG-CGCuGCCGCCGaCGCGuucgaccuugaccUGAgCGCg -3'
miRNA:   3'- cAGCuGCG-CGGUGGC-GCGU-------------ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 22319 0.73 0.195913
Target:  5'- cGUCGGCGUcgaGCCAUaCGCGCAUGAccacaUCGa -3'
miRNA:   3'- -CAGCUGCG---CGGUG-GCGCGUACU-----AGCg -5'
8076 3' -57.5 NC_001978.2 + 22696 0.68 0.414545
Target:  5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3'
miRNA:   3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 22735 0.67 0.463036
Target:  5'- cGUCGGCGUcguguucgucGCUGCCGuCGUcgGGcUCGCc -3'
miRNA:   3'- -CAGCUGCG----------CGGUGGC-GCGuaCU-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 24490 0.68 0.39513
Target:  5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3'
miRNA:   3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24569 0.68 0.396041
Target:  5'- -cCGACGCGCC-CCGgGuUAUGGcgUUGCu -3'
miRNA:   3'- caGCUGCGCGGuGGCgC-GUACU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 24599 0.69 0.343001
Target:  5'- uGUCGGCGUGCUugcccuugccauuACCGCaaugGUGUGcgCGCa -3'
miRNA:   3'- -CAGCUGCGCGG-------------UGGCG----CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 25344 0.66 0.546211
Target:  5'- -gUGGCGCGCCGguaacCCGacuuCGCAUGuggcuugaGUCGCu -3'
miRNA:   3'- caGCUGCGCGGU-----GGC----GCGUAC--------UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 25509 0.8 0.069484
Target:  5'- uGUCGACGUcguucGCCcgguucCCGCGCAUGGUCGUu -3'
miRNA:   3'- -CAGCUGCG-----CGGu-----GGCGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 25719 0.71 0.254844
Target:  5'- -gCGACGCGCuCACUGCcGUAUcGGUCGg -3'
miRNA:   3'- caGCUGCGCG-GUGGCG-CGUA-CUAGCg -5'
8076 3' -57.5 NC_001978.2 + 25913 0.67 0.443274
Target:  5'- aUCGACGCGUa--CGCGC-UGAaCGUg -3'
miRNA:   3'- cAGCUGCGCGgugGCGCGuACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 26431 0.67 0.463036
Target:  5'- uUCGACGCGaa--CGCGCAccuguUGAgcuUCGCg -3'
miRNA:   3'- cAGCUGCGCggugGCGCGU-----ACU---AGCG- -5'
8076 3' -57.5 NC_001978.2 + 27051 0.66 0.503882
Target:  5'- uUCG-UGCGCUACuuCGCGCcgGAagagCGCg -3'
miRNA:   3'- cAGCuGCGCGGUG--GCGCGuaCUa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.