miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 28190 0.7 0.319643
Target:  5'- -aCGGCGCGCCugaacCCGUGCcuUGA-CGCc -3'
miRNA:   3'- caGCUGCGCGGu----GGCGCGu-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 24599 0.69 0.343001
Target:  5'- uGUCGGCGUGCUugcccuugccauuACCGCaaugGUGUGcgCGCa -3'
miRNA:   3'- -CAGCUGCGCGG-------------UGGCG----CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 3762 0.69 0.343828
Target:  5'- uUUGGCGUGCCGCCGCaCcUGAUuucggaCGCu -3'
miRNA:   3'- cAGCUGCGCGGUGGCGcGuACUA------GCG- -5'
8076 3' -57.5 NC_001978.2 + 226 0.69 0.352177
Target:  5'- gGUCGA-GCGCCccgugugcCCGCGCAccUGAagGCg -3'
miRNA:   3'- -CAGCUgCGCGGu-------GGCGCGU--ACUagCG- -5'
8076 3' -57.5 NC_001978.2 + 37865 0.68 0.405227
Target:  5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3'
miRNA:   3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5'
8076 3' -57.5 NC_001978.2 + 33539 0.68 0.405227
Target:  5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3'
miRNA:   3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24490 0.68 0.39513
Target:  5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3'
miRNA:   3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 36566 0.69 0.360669
Target:  5'- gGUCGGCGUGgCA--GUGCAcuUGAUCGCu -3'
miRNA:   3'- -CAGCUGCGCgGUggCGCGU--ACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 8548 0.69 0.360669
Target:  5'- -cCGAugcuuCGCGCCAUgGCGUAUG-UCGUc -3'
miRNA:   3'- caGCU-----GCGCGGUGgCGCGUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 3635 0.69 0.352177
Target:  5'- cGUCGACaaCGCgCACCGCGUAg---CGCu -3'
miRNA:   3'- -CAGCUGc-GCG-GUGGCGCGUacuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 2656 0.67 0.483251
Target:  5'- -cCGAUGUGCCgACCcaaCGCcgGGUUGCc -3'
miRNA:   3'- caGCUGCGCGG-UGGc--GCGuaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 15008 0.66 0.493517
Target:  5'- uUCGuCGCGCCAuacguugcCCGUGCcgGuaCGCa -3'
miRNA:   3'- cAGCuGCGCGGU--------GGCGCGuaCuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 6809 0.66 0.493517
Target:  5'- -aCGGCGCGCuCAgCGuCGaCcgGAUUGCc -3'
miRNA:   3'- caGCUGCGCG-GUgGC-GC-GuaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 32091 0.66 0.493517
Target:  5'- -aCGACGCGCCcCCGCucaGCcUGAagcucCGCc -3'
miRNA:   3'- caGCUGCGCGGuGGCG---CGuACUa----GCG- -5'
8076 3' -57.5 NC_001978.2 + 27742 0.66 0.503882
Target:  5'- uGUUG-CGCGCC-CaGUGCAUGAacucacgaaggUCGCg -3'
miRNA:   3'- -CAGCuGCGCGGuGgCGCGUACU-----------AGCG- -5'
8076 3' -57.5 NC_001978.2 + 13628 0.66 0.503882
Target:  5'- aGUCGACGCcgaACCGgGCGUGuacuUCaGCa -3'
miRNA:   3'- -CAGCUGCGcggUGGCgCGUACu---AG-CG- -5'
8076 3' -57.5 NC_001978.2 + 11523 0.66 0.503882
Target:  5'- gGUCGAgcgGCGCCgACCGCuuGCGUGccCGUg -3'
miRNA:   3'- -CAGCUg--CGCGG-UGGCG--CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 33262 0.66 0.514339
Target:  5'- aGUUGG-GCGCUACgGCGUgaagGUGGUCGa -3'
miRNA:   3'- -CAGCUgCGCGGUGgCGCG----UACUAGCg -5'
8076 3' -57.5 NC_001978.2 + 1649 0.66 0.531251
Target:  5'- uGUCGcugaGCGUCGCCccggucgGCuaucaggugguaaaGCAUGAUCGCg -3'
miRNA:   3'- -CAGCug--CGCGGUGG-------CG--------------CGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 5369 1.12 0.000292
Target:  5'- gGUCGACGCGCCACCGCGCAUGAUCGCg -3'
miRNA:   3'- -CAGCUGCGCGGUGGCGCGUACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.