miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 28190 0.7 0.319643
Target:  5'- -aCGGCGCGCCugaacCCGUGCcuUGA-CGCc -3'
miRNA:   3'- caGCUGCGCGGu----GGCGCGu-ACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 24599 0.69 0.343001
Target:  5'- uGUCGGCGUGCUugcccuugccauuACCGCaaugGUGUGcgCGCa -3'
miRNA:   3'- -CAGCUGCGCGG-------------UGGCG----CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 3762 0.69 0.343828
Target:  5'- uUUGGCGUGCCGCCGCaCcUGAUuucggaCGCu -3'
miRNA:   3'- cAGCUGCGCGGUGGCGcGuACUA------GCG- -5'
8076 3' -57.5 NC_001978.2 + 3635 0.69 0.352177
Target:  5'- cGUCGACaaCGCgCACCGCGUAg---CGCu -3'
miRNA:   3'- -CAGCUGc-GCG-GUGGCGCGUacuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 8548 0.69 0.360669
Target:  5'- -cCGAugcuuCGCGCCAUgGCGUAUG-UCGUc -3'
miRNA:   3'- caGCU-----GCGCGGUGgCGCGUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 36566 0.69 0.360669
Target:  5'- gGUCGGCGUGgCA--GUGCAcuUGAUCGCu -3'
miRNA:   3'- -CAGCUGCGCgGUggCGCGU--ACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24490 0.68 0.39513
Target:  5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3'
miRNA:   3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 33539 0.68 0.405227
Target:  5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3'
miRNA:   3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 37865 0.68 0.405227
Target:  5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3'
miRNA:   3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5'
8076 3' -57.5 NC_001978.2 + 226 0.69 0.352177
Target:  5'- gGUCGA-GCGCCccgugugcCCGCGCAccUGAagGCg -3'
miRNA:   3'- -CAGCUgCGCGGu-------GGCGCGU--ACUagCG- -5'
8076 3' -57.5 NC_001978.2 + 38632 0.68 0.423995
Target:  5'- -cCGACGUGCC-CgGCGCu---UCGCu -3'
miRNA:   3'- caGCUGCGCGGuGgCGCGuacuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 12319 0.68 0.414545
Target:  5'- -cCGACGuCGUCAgCCGCGCAacGAUCa- -3'
miRNA:   3'- caGCUGC-GCGGU-GGCGCGUa-CUAGcg -5'
8076 3' -57.5 NC_001978.2 + 22696 0.68 0.414545
Target:  5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3'
miRNA:   3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24569 0.68 0.396041
Target:  5'- -cCGACGCGCC-CCGgGuUAUGGcgUUGCu -3'
miRNA:   3'- caGCUGCGCGGuGGCgC-GUACU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 17530 0.68 0.386991
Target:  5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3'
miRNA:   3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5'
8076 3' -57.5 NC_001978.2 + 19718 0.68 0.386991
Target:  5'- uGUCGAagGCGUCcUUGCGCG-GGUCGCu -3'
miRNA:   3'- -CAGCUg-CGCGGuGGCGCGUaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 32372 0.69 0.347151
Target:  5'- -gCGugGCGCCuucggcucaguaggcACgGCGCGUGAaCGUc -3'
miRNA:   3'- caGCugCGCGG---------------UGgCGCGUACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 19956 0.7 0.289414
Target:  5'- -aCGGCGUuCCGgaGCGCGUGaAUCGCg -3'
miRNA:   3'- caGCUGCGcGGUggCGCGUAC-UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 16004 0.71 0.268249
Target:  5'- aGUCGGCGC-CCGUCGCGCccGuGUCGCc -3'
miRNA:   3'- -CAGCUGCGcGGUGGCGCGuaC-UAGCG- -5'
8076 3' -57.5 NC_001978.2 + 28893 0.71 0.268249
Target:  5'- cGUCGGCGagcgcuGCCAacaCGCGCAUuucGAUUGCc -3'
miRNA:   3'- -CAGCUGCg-----CGGUg--GCGCGUA---CUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.