Results 1 - 20 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 22735 | 0.67 | 0.463036 |
Target: 5'- cGUCGGCGUcguguucgucGCUGCCGuCGUcgGGcUCGCc -3' miRNA: 3'- -CAGCUGCG----------CGGUGGC-GCGuaCU-AGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 33539 | 0.68 | 0.405227 |
Target: 5'- cGUUGcCGCuGCCAUUGCGgGUG-UCGCc -3' miRNA: 3'- -CAGCuGCG-CGGUGGCGCgUACuAGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 37865 | 0.68 | 0.405227 |
Target: 5'- uGUCGGCggggGCGCCGucccguacaacgUCGCGCGUGAgCGg -3' miRNA: 3'- -CAGCUG----CGCGGU------------GGCGCGUACUaGCg -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 32189 | 0.68 | 0.423995 |
Target: 5'- --gGACGCGCgCACCGCuGaggGAUgGCg -3' miRNA: 3'- cagCUGCGCG-GUGGCG-CguaCUAgCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 35595 | 0.67 | 0.443274 |
Target: 5'- cGUCGGCGCGaCCgaagaccccgggACCGUGCccacaAUCGCc -3' miRNA: 3'- -CAGCUGCGC-GG------------UGGCGCGuac--UAGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 25913 | 0.67 | 0.443274 |
Target: 5'- aUCGACGCGUa--CGCGC-UGAaCGUg -3' miRNA: 3'- cAGCUGCGCGgugGCGCGuACUaGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 1842 | 0.67 | 0.453096 |
Target: 5'- uUCGACGCGCUgacGCUGgGCAgugcCGCc -3' miRNA: 3'- cAGCUGCGCGG---UGGCgCGUacuaGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 7661 | 0.67 | 0.453096 |
Target: 5'- uUCGuaACGCGCUGCCGaCGUAcGAagGCa -3' miRNA: 3'- cAGC--UGCGCGGUGGC-GCGUaCUagCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 37398 | 0.67 | 0.453096 |
Target: 5'- aUCGAUaGCGCCGCUGagGCAcUGAcCGCc -3' miRNA: 3'- cAGCUG-CGCGGUGGCg-CGU-ACUaGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 24490 | 0.68 | 0.39513 |
Target: 5'- cUCGACGCGCUgagcaacgccauaACCcgggGCGCGUcGGUUGUg -3' miRNA: 3'- cAGCUGCGCGG-------------UGG----CGCGUA-CUAGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 36566 | 0.69 | 0.360669 |
Target: 5'- gGUCGGCGUGgCA--GUGCAcuUGAUCGCu -3' miRNA: 3'- -CAGCUGCGCgGUggCGCGU--ACUAGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 8548 | 0.69 | 0.360669 |
Target: 5'- -cCGAugcuuCGCGCCAUgGCGUAUG-UCGUc -3' miRNA: 3'- caGCU-----GCGCGGUGgCGCGUACuAGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 6749 | 0.72 | 0.217914 |
Target: 5'- gGUCGACGCugaGCgCGCCGUGUAUGGcauUCGg -3' miRNA: 3'- -CAGCUGCG---CG-GUGGCGCGUACU---AGCg -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 25719 | 0.71 | 0.254844 |
Target: 5'- -gCGACGCGCuCACUGCcGUAUcGGUCGg -3' miRNA: 3'- caGCUGCGCG-GUGGCG-CGUA-CUAGCg -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 17248 | 0.7 | 0.296755 |
Target: 5'- aGUCGGCGCaCUAcCCGCGCAcGGcuUCGUg -3' miRNA: 3'- -CAGCUGCGcGGU-GGCGCGUaCU--AGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 28190 | 0.7 | 0.319643 |
Target: 5'- -aCGGCGCGCCugaacCCGUGCcuUGA-CGCc -3' miRNA: 3'- caGCUGCGCGGu----GGCGCGu-ACUaGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 24599 | 0.69 | 0.343001 |
Target: 5'- uGUCGGCGUGCUugcccuugccauuACCGCaaugGUGUGcgCGCa -3' miRNA: 3'- -CAGCUGCGCGG-------------UGGCG----CGUACuaGCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 3762 | 0.69 | 0.343828 |
Target: 5'- uUUGGCGUGCCGCCGCaCcUGAUuucggaCGCu -3' miRNA: 3'- cAGCUGCGCGGUGGCGcGuACUA------GCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 226 | 0.69 | 0.352177 |
Target: 5'- gGUCGA-GCGCCccgugugcCCGCGCAccUGAagGCg -3' miRNA: 3'- -CAGCUgCGCGGu-------GGCGCGU--ACUagCG- -5' |
|||||||
8076 | 3' | -57.5 | NC_001978.2 | + | 3635 | 0.69 | 0.352177 |
Target: 5'- cGUCGACaaCGCgCACCGCGUAg---CGCu -3' miRNA: 3'- -CAGCUGc-GCG-GUGGCGCGUacuaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home