miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8076 3' -57.5 NC_001978.2 + 5708 0.66 0.545137
Target:  5'- aGUCGGCGUcaGCCucACCGaaggcaGCGUuggcgccGGUCGCg -3'
miRNA:   3'- -CAGCUGCG--CGG--UGGCg-----CGUA-------CUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 22696 0.68 0.414545
Target:  5'- aGUCGGCaaccCGCUACCGgGCGc-GUCGCu -3'
miRNA:   3'- -CAGCUGc---GCGGUGGCgCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 17530 0.68 0.386991
Target:  5'- -cCGACGCGCaCGCuUGCGCA-GAUacaCGCc -3'
miRNA:   3'- caGCUGCGCG-GUG-GCGCGUaCUA---GCG- -5'
8076 3' -57.5 NC_001978.2 + 5369 1.12 0.000292
Target:  5'- gGUCGACGCGCCACCGCGCAUGAUCGCg -3'
miRNA:   3'- -CAGCUGCGCGGUGGCGCGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 13628 0.66 0.503882
Target:  5'- aGUCGACGCcgaACCGgGCGUGuacuUCaGCa -3'
miRNA:   3'- -CAGCUGCGcggUGGCgCGUACu---AG-CG- -5'
8076 3' -57.5 NC_001978.2 + 27742 0.66 0.503882
Target:  5'- uGUUG-CGCGCC-CaGUGCAUGAacucacgaaggUCGCg -3'
miRNA:   3'- -CAGCuGCGCGGuGgCGCGUACU-----------AGCG- -5'
8076 3' -57.5 NC_001978.2 + 6809 0.66 0.493517
Target:  5'- -aCGGCGCGCuCAgCGuCGaCcgGAUUGCc -3'
miRNA:   3'- caGCUGCGCG-GUgGC-GC-GuaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 15008 0.66 0.493517
Target:  5'- uUCGuCGCGCCAuacguugcCCGUGCcgGuaCGCa -3'
miRNA:   3'- cAGCuGCGCGGU--------GGCGCGuaCuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 9960 0.67 0.453096
Target:  5'- aGUCGACcaacccaGUCugaagACCGCGCGUGAaCGCc -3'
miRNA:   3'- -CAGCUGcg-----CGG-----UGGCGCGUACUaGCG- -5'
8076 3' -57.5 NC_001978.2 + 12319 0.68 0.414545
Target:  5'- -cCGACGuCGUCAgCCGCGCAacGAUCa- -3'
miRNA:   3'- caGCUGC-GCGGU-GGCGCGUa-CUAGcg -5'
8076 3' -57.5 NC_001978.2 + 4970 0.67 0.443274
Target:  5'- cUCG-CGCGCCucaaaguUgGCGCucagaGUGGUCGCg -3'
miRNA:   3'- cAGCuGCGCGGu------GgCGCG-----UACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 39846 0.67 0.483251
Target:  5'- cGUCGGCGCGCU-CCGCaaCAaGGuUCGCc -3'
miRNA:   3'- -CAGCUGCGCGGuGGCGc-GUaCU-AGCG- -5'
8076 3' -57.5 NC_001978.2 + 1649 0.66 0.531251
Target:  5'- uGUCGcugaGCGUCGCCccggucgGCuaucaggugguaaaGCAUGAUCGCg -3'
miRNA:   3'- -CAGCug--CGCGGUGG-------CG--------------CGUACUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 19931 0.68 0.433572
Target:  5'- cGUCGGCccccggcacgGCGCCAauGCGCAc-GUCGCc -3'
miRNA:   3'- -CAGCUG----------CGCGGUggCGCGUacUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 33262 0.66 0.514339
Target:  5'- aGUUGG-GCGCUACgGCGUgaagGUGGUCGa -3'
miRNA:   3'- -CAGCUgCGCGGUGgCGCG----UACUAGCg -5'
8076 3' -57.5 NC_001978.2 + 2656 0.67 0.483251
Target:  5'- -cCGAUGUGCCgACCcaaCGCcgGGUUGCc -3'
miRNA:   3'- caGCUGCGCGG-UGGc--GCGuaCUAGCG- -5'
8076 3' -57.5 NC_001978.2 + 38632 0.68 0.423995
Target:  5'- -cCGACGUGCC-CgGCGCu---UCGCu -3'
miRNA:   3'- caGCUGCGCGGuGgCGCGuacuAGCG- -5'
8076 3' -57.5 NC_001978.2 + 24569 0.68 0.396041
Target:  5'- -cCGACGCGCC-CCGgGuUAUGGcgUUGCu -3'
miRNA:   3'- caGCUGCGCGGuGGCgC-GUACU--AGCG- -5'
8076 3' -57.5 NC_001978.2 + 11523 0.66 0.503882
Target:  5'- gGUCGAgcgGCGCCgACCGCuuGCGUGccCGUg -3'
miRNA:   3'- -CAGCUg--CGCGG-UGGCG--CGUACuaGCG- -5'
8076 3' -57.5 NC_001978.2 + 32091 0.66 0.493517
Target:  5'- -aCGACGCGCCcCCGCucaGCcUGAagcucCGCc -3'
miRNA:   3'- caGCUGCGCGGuGGCG---CGuACUa----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.