Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8077 | 3' | -50.4 | NC_001978.2 | + | 6012 | 1.11 | 0.001841 |
Target: 5'- gUGCUGAACUUCGCGUCAACCGAACGGu -3' miRNA: 3'- -ACGACUUGAAGCGCAGUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 32352 | 0.76 | 0.391726 |
Target: 5'- cGCUGAA----GCGUCcGCCGAACGGc -3' miRNA: 3'- aCGACUUgaagCGCAGuUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 26449 | 0.75 | 0.401256 |
Target: 5'- cUGUUGAGCUUCGCGaacggcguggUCGACCuucguACGGg -3' miRNA: 3'- -ACGACUUGAAGCGC----------AGUUGGcu---UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 27978 | 0.75 | 0.420753 |
Target: 5'- cGCUGAuugaccCGCGUCAGCCccaGGACGGc -3' miRNA: 3'- aCGACUugaa--GCGCAGUUGG---CUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 16411 | 0.74 | 0.461401 |
Target: 5'- cGCUGGGCUUCGaagcgugGUCGGucuacCCGGGCGGc -3' miRNA: 3'- aCGACUUGAAGCg------CAGUU-----GGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 4939 | 0.72 | 0.570859 |
Target: 5'- cGCUGAGCUUCG-GUC--CCuGACGGa -3' miRNA: 3'- aCGACUUGAAGCgCAGuuGGcUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 16314 | 0.72 | 0.570859 |
Target: 5'- aGCgUGAccgucggacccgGCUUCGUGUUGACCGAcgucACGGc -3' miRNA: 3'- aCG-ACU------------UGAAGCGCAGUUGGCU----UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 28017 | 0.72 | 0.605121 |
Target: 5'- cGCcuuaauCUUCGUGUCGACCGugcGCGGu -3' miRNA: 3'- aCGacuu--GAAGCGCAGUUGGCu--UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 20483 | 0.72 | 0.605121 |
Target: 5'- cGUUGAAguCUUCGgcgaCGUCGGCCGAcCGGc -3' miRNA: 3'- aCGACUU--GAAGC----GCAGUUGGCUuGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 8195 | 0.71 | 0.651107 |
Target: 5'- uUGCUcGACUUCGgGUCGcggugACCGucCGGg -3' miRNA: 3'- -ACGAcUUGAAGCgCAGU-----UGGCuuGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 11414 | 0.7 | 0.708061 |
Target: 5'- ---cGGGCgcaGCGUcCGACCGAACGGc -3' miRNA: 3'- acgaCUUGaagCGCA-GUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 38930 | 0.69 | 0.752233 |
Target: 5'- cGCUGAAgguuCUUCGUGUCGagaaucuucGCCGAcuucaGCGa -3' miRNA: 3'- aCGACUU----GAAGCGCAGU---------UGGCU-----UGCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 7368 | 0.69 | 0.773571 |
Target: 5'- -cCUGggUUgCGUGgCGACCGAAUGGa -3' miRNA: 3'- acGACuuGAaGCGCaGUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 3988 | 0.69 | 0.773571 |
Target: 5'- gGUUGAACUUCacgaaccugaaGCgGUCGGCCGucuCGGc -3' miRNA: 3'- aCGACUUGAAG-----------CG-CAGUUGGCuu-GCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 13257 | 0.69 | 0.784006 |
Target: 5'- cGCUGAACgcgucCGgGUgGcacagcuauuacGCCGGGCGGg -3' miRNA: 3'- aCGACUUGaa---GCgCAgU------------UGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 32225 | 0.68 | 0.793251 |
Target: 5'- gGCUGAGCggcagcgcgccaUUCGCGaagcgcucaacgUCGACCGGgucacgacgcccaGCGGa -3' miRNA: 3'- aCGACUUG------------AAGCGC------------AGUUGGCU-------------UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 4786 | 0.68 | 0.814229 |
Target: 5'- cGaCUGAAgagCGCGauuccCAGCCGGACGGc -3' miRNA: 3'- aC-GACUUgaaGCGCa----GUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 30737 | 0.68 | 0.814229 |
Target: 5'- cGCcGug--UCGaCGUCGACCGAAgGGg -3' miRNA: 3'- aCGaCuugaAGC-GCAGUUGGCUUgCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 36475 | 0.68 | 0.814229 |
Target: 5'- aGCUGGGCgcguggcccgUCGCGUU--CCGAugGa -3' miRNA: 3'- aCGACUUGa---------AGCGCAGuuGGCUugCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 38520 | 0.68 | 0.827709 |
Target: 5'- cGCUGGGCUugcugcgcucgaaucUCGCGcucgcgCGACUG-ACGGu -3' miRNA: 3'- aCGACUUGA---------------AGCGCa-----GUUGGCuUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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