Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8077 | 3' | -50.4 | NC_001978.2 | + | 32352 | 0.76 | 0.391726 |
Target: 5'- cGCUGAA----GCGUCcGCCGAACGGc -3' miRNA: 3'- aCGACUUgaagCGCAGuUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 23429 | 0.68 | 0.833354 |
Target: 5'- gGCUuuGACUUCGUGUCGcacGCCG-ACGa -3' miRNA: 3'- aCGAc-UUGAAGCGCAGU---UGGCuUGCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 34231 | 0.68 | 0.833354 |
Target: 5'- cGCUGAGCgcaaCGCGauacgUCAugcGCCGucgGCGGa -3' miRNA: 3'- aCGACUUGaa--GCGC-----AGU---UGGCu--UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 10706 | 0.67 | 0.842575 |
Target: 5'- aGCUGGgcgGCUUUGCGUCGucgcuugcuuCCGcuGugGGg -3' miRNA: 3'- aCGACU---UGAAGCGCAGUu---------GGC--UugCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 647 | 0.67 | 0.842575 |
Target: 5'- uUGCUGAACgcgGCGUacaCGGCgCGggUGGc -3' miRNA: 3'- -ACGACUUGaagCGCA---GUUG-GCuuGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 5925 | 0.67 | 0.851554 |
Target: 5'- cGCcGGuucGCUcCGUGUCGACCGuuCGGu -3' miRNA: 3'- aCGaCU---UGAaGCGCAGUUGGCuuGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 16720 | 0.67 | 0.86875 |
Target: 5'- cGCUGccCaUUGCGUCGACCGuGCu- -3' miRNA: 3'- aCGACuuGaAGCGCAGUUGGCuUGcc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 24994 | 0.66 | 0.884872 |
Target: 5'- cGCUGAcCUUCGguccgaagccCGcCGACUGAGcCGGg -3' miRNA: 3'- aCGACUuGAAGC----------GCaGUUGGCUU-GCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 31804 | 0.66 | 0.906924 |
Target: 5'- cGaCUGGGCggcUCGCGUCGGCaaguuCGGu -3' miRNA: 3'- aC-GACUUGa--AGCGCAGUUGgcuu-GCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 30737 | 0.68 | 0.814229 |
Target: 5'- cGCcGug--UCGaCGUCGACCGAAgGGg -3' miRNA: 3'- aCGaCuugaAGC-GCAGUUGGCUUgCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 36475 | 0.68 | 0.814229 |
Target: 5'- aGCUGGGCgcguggcccgUCGCGUU--CCGAugGa -3' miRNA: 3'- aCGACUUGa---------AGCGCAGuuGGCUugCc -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 4786 | 0.68 | 0.814229 |
Target: 5'- cGaCUGAAgagCGCGauuccCAGCCGGACGGc -3' miRNA: 3'- aC-GACUUgaaGCGCa----GUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 26449 | 0.75 | 0.401256 |
Target: 5'- cUGUUGAGCUUCGCGaacggcguggUCGACCuucguACGGg -3' miRNA: 3'- -ACGACUUGAAGCGC----------AGUUGGcu---UGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 27978 | 0.75 | 0.420753 |
Target: 5'- cGCUGAuugaccCGCGUCAGCCccaGGACGGc -3' miRNA: 3'- aCGACUugaa--GCGCAGUUGG---CUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 16411 | 0.74 | 0.461401 |
Target: 5'- cGCUGGGCUUCGaagcgugGUCGGucuacCCGGGCGGc -3' miRNA: 3'- aCGACUUGAAGCg------CAGUU-----GGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 4939 | 0.72 | 0.570859 |
Target: 5'- cGCUGAGCUUCG-GUC--CCuGACGGa -3' miRNA: 3'- aCGACUUGAAGCgCAGuuGGcUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 11414 | 0.7 | 0.708061 |
Target: 5'- ---cGGGCgcaGCGUcCGACCGAACGGc -3' miRNA: 3'- acgaCUUGaagCGCA-GUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 7368 | 0.69 | 0.773571 |
Target: 5'- -cCUGggUUgCGUGgCGACCGAAUGGa -3' miRNA: 3'- acGACuuGAaGCGCaGUUGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 13257 | 0.69 | 0.784006 |
Target: 5'- cGCUGAACgcgucCGgGUgGcacagcuauuacGCCGGGCGGg -3' miRNA: 3'- aCGACUUGaa---GCgCAgU------------UGGCUUGCC- -5' |
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8077 | 3' | -50.4 | NC_001978.2 | + | 32225 | 0.68 | 0.793251 |
Target: 5'- gGCUGAGCggcagcgcgccaUUCGCGaagcgcucaacgUCGACCGGgucacgacgcccaGCGGa -3' miRNA: 3'- aCGACUUG------------AAGCGC------------AGUUGGCU-------------UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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