miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8077 3' -50.4 NC_001978.2 + 647 0.67 0.842575
Target:  5'- uUGCUGAACgcgGCGUacaCGGCgCGggUGGc -3'
miRNA:   3'- -ACGACUUGaagCGCA---GUUG-GCuuGCC- -5'
8077 3' -50.4 NC_001978.2 + 3988 0.69 0.773571
Target:  5'- gGUUGAACUUCacgaaccugaaGCgGUCGGCCGucuCGGc -3'
miRNA:   3'- aCGACUUGAAG-----------CG-CAGUUGGCuu-GCC- -5'
8077 3' -50.4 NC_001978.2 + 4786 0.68 0.814229
Target:  5'- cGaCUGAAgagCGCGauuccCAGCCGGACGGc -3'
miRNA:   3'- aC-GACUUgaaGCGCa----GUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 4939 0.72 0.570859
Target:  5'- cGCUGAGCUUCG-GUC--CCuGACGGa -3'
miRNA:   3'- aCGACUUGAAGCgCAGuuGGcUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 5780 0.67 0.86875
Target:  5'- ---cGAACUUCGCGUUcuugcgguacGCCG-ACGGg -3'
miRNA:   3'- acgaCUUGAAGCGCAGu---------UGGCuUGCC- -5'
8077 3' -50.4 NC_001978.2 + 5925 0.67 0.851554
Target:  5'- cGCcGGuucGCUcCGUGUCGACCGuuCGGu -3'
miRNA:   3'- aCGaCU---UGAaGCGCAGUUGGCuuGCC- -5'
8077 3' -50.4 NC_001978.2 + 6012 1.11 0.001841
Target:  5'- gUGCUGAACUUCGCGUCAACCGAACGGu -3'
miRNA:   3'- -ACGACUUGAAGCGCAGUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 7368 0.69 0.773571
Target:  5'- -cCUGggUUgCGUGgCGACCGAAUGGa -3'
miRNA:   3'- acGACuuGAaGCGCaGUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 8195 0.71 0.651107
Target:  5'- uUGCUcGACUUCGgGUCGcggugACCGucCGGg -3'
miRNA:   3'- -ACGAcUUGAAGCgCAGU-----UGGCuuGCC- -5'
8077 3' -50.4 NC_001978.2 + 9144 0.66 0.884872
Target:  5'- aGCcGGAg-UCGCGccCAACUGGGCGGc -3'
miRNA:   3'- aCGaCUUgaAGCGCa-GUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 10706 0.67 0.842575
Target:  5'- aGCUGGgcgGCUUUGCGUCGucgcuugcuuCCGcuGugGGg -3'
miRNA:   3'- aCGACU---UGAAGCGCAGUu---------GGC--UugCC- -5'
8077 3' -50.4 NC_001978.2 + 11080 0.67 0.842575
Target:  5'- gGC--GACUUCGCGccCAAUcgCGAACGGg -3'
miRNA:   3'- aCGacUUGAAGCGCa-GUUG--GCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 11293 0.66 0.892513
Target:  5'- cGCUGAACcaa-CGUCAgaucagacgACCGAACGu -3'
miRNA:   3'- aCGACUUGaagcGCAGU---------UGGCUUGCc -5'
8077 3' -50.4 NC_001978.2 + 11414 0.7 0.708061
Target:  5'- ---cGGGCgcaGCGUcCGACCGAACGGc -3'
miRNA:   3'- acgaCUUGaagCGCA-GUUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 13202 0.67 0.860282
Target:  5'- gGCUGAAg--CGUGUCGGggucggcagcgUCGAGCGGc -3'
miRNA:   3'- aCGACUUgaaGCGCAGUU-----------GGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 13257 0.69 0.784006
Target:  5'- cGCUGAACgcgucCGgGUgGcacagcuauuacGCCGGGCGGg -3'
miRNA:   3'- aCGACUUGaa---GCgCAgU------------UGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 14507 0.66 0.884872
Target:  5'- cGCcGucCUcaGCGUCccAGCCGAACGGg -3'
miRNA:   3'- aCGaCuuGAagCGCAG--UUGGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 16314 0.72 0.570859
Target:  5'- aGCgUGAccgucggacccgGCUUCGUGUUGACCGAcgucACGGc -3'
miRNA:   3'- aCG-ACU------------UGAAGCGCAGUUGGCU----UGCC- -5'
8077 3' -50.4 NC_001978.2 + 16411 0.74 0.461401
Target:  5'- cGCUGGGCUUCGaagcgugGUCGGucuacCCGGGCGGc -3'
miRNA:   3'- aCGACUUGAAGCg------CAGUU-----GGCUUGCC- -5'
8077 3' -50.4 NC_001978.2 + 16412 0.67 0.860282
Target:  5'- cGUUGGcaaucggcaggcGCUUCGCGgag-UCGAGCGGg -3'
miRNA:   3'- aCGACU------------UGAAGCGCaguuGGCUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.