Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8077 | 5' | -57.7 | NC_001978.2 | + | 23501 | 0.7 | 0.288913 |
Target: 5'- gAGCGGAaggcagCGGCGAAGgaguacgacgcgcCGAACCCGGc- -3' miRNA: 3'- -UCGCUUg-----GCCGCUUC-------------GCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 25959 | 0.66 | 0.46476 |
Target: 5'- ---uGACUGGCGuGAGCGcGACCCGGg- -3' miRNA: 3'- ucgcUUGGCCGC-UUCGC-UUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 27106 | 0.68 | 0.387128 |
Target: 5'- gGGCGGAgUCGGCGGgcauuguggccugGGCGGugCgCGGUGc -3' miRNA: 3'- -UCGCUU-GGCCGCU-------------UCGCUugG-GCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 27289 | 0.66 | 0.474903 |
Target: 5'- cGgGAagaaACCGGCG-AGCGcAucggacgucGCCCGGUAc -3' miRNA: 3'- uCgCU----UGGCCGCuUCGC-U---------UGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 27886 | 0.68 | 0.379042 |
Target: 5'- cGGCGGcuUCGGCGAAGCGuccGCCCa--- -3' miRNA: 3'- -UCGCUu-GGCCGCUUCGCu--UGGGccau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 30008 | 0.66 | 0.51546 |
Target: 5'- cGGCGGACUgGGCGgcGCGAAUCgucucaaUGGUc -3' miRNA: 3'- -UCGCUUGG-CCGCuuCGCUUGG-------GCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 32712 | 0.71 | 0.2615 |
Target: 5'- gAGCGcaagaauCCGGCGAcGGCuucGAACCCGGg- -3' miRNA: 3'- -UCGCuu-----GGCCGCU-UCG---CUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 33495 | 0.66 | 0.495513 |
Target: 5'- cGCGAAgguGCGGuauGCGGACCCGGa- -3' miRNA: 3'- uCGCUUggcCGCUu--CGCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 33932 | 0.7 | 0.27109 |
Target: 5'- aGGCG-ACCGGCGAAGagaucacggcgcuucUGAACCgGGg- -3' miRNA: 3'- -UCGCuUGGCCGCUUC---------------GCUUGGgCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 35041 | 0.66 | 0.505969 |
Target: 5'- uGCGGcauuacucgacACCccccagGGCGAAGCGGAUUgGGUAg -3' miRNA: 3'- uCGCU-----------UGG------CCGCUUCGCUUGGgCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36252 | 0.69 | 0.328094 |
Target: 5'- gAGuUGGGCacgaaGGCGAuuguGCGAACCCGGc- -3' miRNA: 3'- -UC-GCUUGg----CCGCUu---CGCUUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36689 | 0.71 | 0.228893 |
Target: 5'- cGCGGaaccugagccgguACCGGCGGAGCcuGAGCCCGu-- -3' miRNA: 3'- uCGCU-------------UGGCCGCUUCG--CUUGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 36867 | 0.67 | 0.45473 |
Target: 5'- uGGCGucACCGGC----UGAACCCGGUu -3' miRNA: 3'- -UCGCu-UGGCCGcuucGCUUGGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 38049 | 0.71 | 0.254821 |
Target: 5'- cGGCGAGCCGGUGAcgcucgaauGGCGuuCgCGGUc -3' miRNA: 3'- -UCGCUUGGCCGCU---------UCGCuuGgGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 38590 | 0.68 | 0.361483 |
Target: 5'- cGGCGuucgggaCGGCGGAGC--GCCCGGa- -3' miRNA: 3'- -UCGCuug----GCCGCUUCGcuUGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 40208 | 0.66 | 0.495513 |
Target: 5'- aAGaCGuAgCGGCGuAGCGAgacACCCGGg- -3' miRNA: 3'- -UC-GCuUgGCCGCuUCGCU---UGGGCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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