Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8077 | 5' | -57.7 | NC_001978.2 | + | 987 | 0.72 | 0.211927 |
Target: 5'- cGGCGGgaguCUGGCgGggGCGAcgACCCGGa- -3' miRNA: 3'- -UCGCUu---GGCCG-CuuCGCU--UGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 1459 | 0.74 | 0.144572 |
Target: 5'- cGGCuGACCGGCGAA-CGAACCCgucaGGUAg -3' miRNA: 3'- -UCGcUUGGCCGCUUcGCUUGGG----CCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 1661 | 0.67 | 0.425368 |
Target: 5'- cGCGAAgcaaaUGGUGAAcGCGAGCCCGa-- -3' miRNA: 3'- uCGCUUg----GCCGCUU-CGCUUGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 1953 | 0.66 | 0.516519 |
Target: 5'- gAGCGGGucaacuCCGGUGAGGCuGAcgACCCGa-- -3' miRNA: 3'- -UCGCUU------GGCCGCUUCG-CU--UGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 4105 | 0.67 | 0.406431 |
Target: 5'- gGGCGAAgUCGGCGAAGagccgGAGCCUGa-- -3' miRNA: 3'- -UCGCUU-GGCCGCUUCg----CUUGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 4167 | 0.66 | 0.46476 |
Target: 5'- cGGCGGaagaGCCGGaCGAAGagcCGGAgCCGGa- -3' miRNA: 3'- -UCGCU----UGGCC-GCUUC---GCUUgGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 5977 | 1.06 | 0.000608 |
Target: 5'- gAGCGAACCGGCGAAGCGAACCCGGUAc -3' miRNA: 3'- -UCGCUUGGCCGCUUCGCUUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8086 | 0.68 | 0.379042 |
Target: 5'- cGGCGAAguucugauuccCCaGGCGAAGCacGAaaGCCCGGa- -3' miRNA: 3'- -UCGCUU-----------GG-CCGCUUCG--CU--UGGGCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8580 | 0.66 | 0.489287 |
Target: 5'- cGCGAACCGGCcuuguucagggaucGAGCGGcugACCCGuGa- -3' miRNA: 3'- uCGCUUGGCCGc-------------UUCGCU---UGGGC-Cau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8811 | 0.68 | 0.361483 |
Target: 5'- aAGCGcGCCGGUcgGggGCGAAgCgGGg- -3' miRNA: 3'- -UCGCuUGGCCG--CuuCGCUUgGgCCau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 8969 | 0.67 | 0.425368 |
Target: 5'- cGGCGAACaGGCGAGGgGcuuGCCCuugcugcgGGUGg -3' miRNA: 3'- -UCGCUUGgCCGCUUCgCu--UGGG--------CCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 9118 | 0.67 | 0.406431 |
Target: 5'- gGGUGAagccGCCGGUGAAGUGuauucGgCCGGUu -3' miRNA: 3'- -UCGCU----UGGCCGCUUCGCu----UgGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 10872 | 0.78 | 0.075082 |
Target: 5'- gGGUGGACCGGCGuccgGGUGGACCCGuGUu -3' miRNA: 3'- -UCGCUUGGCCGCu---UCGCUUGGGC-CAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 11644 | 0.71 | 0.235622 |
Target: 5'- gGGCagGGACCGGCGccGGaCG-ACCCGGUAa -3' miRNA: 3'- -UCG--CUUGGCCGCu-UC-GCuUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 16423 | 0.71 | 0.252845 |
Target: 5'- aAGCGuggucggucuacccGGgCGGCGuGGUGAACCCGGUu -3' miRNA: 3'- -UCGC--------------UUgGCCGCuUCGCUUGGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 17581 | 0.66 | 0.516519 |
Target: 5'- aGGCG-ACCGGCGAcguuGGCGAcguuggcgGCUCGa-- -3' miRNA: 3'- -UCGCuUGGCCGCU----UCGCU--------UGGGCcau -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 17633 | 0.67 | 0.45473 |
Target: 5'- cGCuGAGCCGucCGGAGCcgucGCCCGGUAc -3' miRNA: 3'- uCG-CUUGGCc-GCUUCGcu--UGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 19127 | 0.67 | 0.443835 |
Target: 5'- cGCGAGCgCGGCaacaGGAGUGAgucaacgAUCCGGUu -3' miRNA: 3'- uCGCUUG-GCCG----CUUCGCU-------UGGGCCAu -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 20904 | 0.72 | 0.195527 |
Target: 5'- cGCuacGGCCGGaCGGAGCuuGCCCGGUAc -3' miRNA: 3'- uCGc--UUGGCC-GCUUCGcuUGGGCCAU- -5' |
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8077 | 5' | -57.7 | NC_001978.2 | + | 22605 | 0.74 | 0.166034 |
Target: 5'- gGGCGcaugguGACCGGCacucAGCGAcgcGCCCGGUAg -3' miRNA: 3'- -UCGC------UUGGCCGcu--UCGCU---UGGGCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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