miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8077 5' -57.7 NC_001978.2 + 11644 0.71 0.235622
Target:  5'- gGGCagGGACCGGCGccGGaCG-ACCCGGUAa -3'
miRNA:   3'- -UCG--CUUGGCCGCu-UC-GCuUGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 16423 0.71 0.252845
Target:  5'- aAGCGuggucggucuacccGGgCGGCGuGGUGAACCCGGUu -3'
miRNA:   3'- -UCGC--------------UUgGCCGCuUCGCUUGGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 38049 0.71 0.254821
Target:  5'- cGGCGAGCCGGUGAcgcucgaauGGCGuuCgCGGUc -3'
miRNA:   3'- -UCGCUUGGCCGCU---------UCGCuuGgGCCAu -5'
8077 5' -57.7 NC_001978.2 + 32712 0.71 0.2615
Target:  5'- gAGCGcaagaauCCGGCGAcGGCuucGAACCCGGg- -3'
miRNA:   3'- -UCGCuu-----GGCCGCU-UCG---CUUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 33932 0.7 0.27109
Target:  5'- aGGCG-ACCGGCGAAGagaucacggcgcuucUGAACCgGGg- -3'
miRNA:   3'- -UCGCuUGGCCGCUUC---------------GCUUGGgCCau -5'
8077 5' -57.7 NC_001978.2 + 23501 0.7 0.288913
Target:  5'- gAGCGGAaggcagCGGCGAAGgaguacgacgcgcCGAACCCGGc- -3'
miRNA:   3'- -UCGCUUg-----GCCGCUUC-------------GCUUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 36252 0.69 0.328094
Target:  5'- gAGuUGGGCacgaaGGCGAuuguGCGAACCCGGc- -3'
miRNA:   3'- -UC-GCUUGg----CCGCUu---CGCUUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 38590 0.68 0.361483
Target:  5'- cGGCGuucgggaCGGCGGAGC--GCCCGGa- -3'
miRNA:   3'- -UCGCuug----GCCGCUUCGcuUGGGCCau -5'
8077 5' -57.7 NC_001978.2 + 1459 0.74 0.144572
Target:  5'- cGGCuGACCGGCGAA-CGAACCCgucaGGUAg -3'
miRNA:   3'- -UCGcUUGGCCGCUUcGCUUGGG----CCAU- -5'
8077 5' -57.7 NC_001978.2 + 27886 0.68 0.379042
Target:  5'- cGGCGGcuUCGGCGAAGCGuccGCCCa--- -3'
miRNA:   3'- -UCGCUu-GGCCGCUUCGCu--UGGGccau -5'
8077 5' -57.7 NC_001978.2 + 19127 0.67 0.443835
Target:  5'- cGCGAGCgCGGCaacaGGAGUGAgucaacgAUCCGGUu -3'
miRNA:   3'- uCGCUUG-GCCG----CUUCGCU-------UGGGCCAu -5'
8077 5' -57.7 NC_001978.2 + 27289 0.66 0.474903
Target:  5'- cGgGAagaaACCGGCG-AGCGcAucggacgucGCCCGGUAc -3'
miRNA:   3'- uCgCU----UGGCCGCuUCGC-U---------UGGGCCAU- -5'
8077 5' -57.7 NC_001978.2 + 8580 0.66 0.489287
Target:  5'- cGCGAACCGGCcuuguucagggaucGAGCGGcugACCCGuGa- -3'
miRNA:   3'- uCGCUUGGCCGc-------------UUCGCU---UGGGC-Cau -5'
8077 5' -57.7 NC_001978.2 + 35041 0.66 0.505969
Target:  5'- uGCGGcauuacucgacACCccccagGGCGAAGCGGAUUgGGUAg -3'
miRNA:   3'- uCGCU-----------UGG------CCGCUUCGCUUGGgCCAU- -5'
8077 5' -57.7 NC_001978.2 + 30008 0.66 0.51546
Target:  5'- cGGCGGACUgGGCGgcGCGAAUCgucucaaUGGUc -3'
miRNA:   3'- -UCGCUUGG-CCGCuuCGCUUGG-------GCCAu -5'
8077 5' -57.7 NC_001978.2 + 5977 1.06 0.000608
Target:  5'- gAGCGAACCGGCGAAGCGAACCCGGUAc -3'
miRNA:   3'- -UCGCUUGGCCGCUUCGCUUGGGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.