miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8083 3' -55.3 NC_001978.2 + 26492 0.72 0.297481
Target:  5'- cAGGUGcGCGuUCGCGUCGAACUCuuCCGc -3'
miRNA:   3'- -UUCGC-UGC-AGCGCAGCUUGAGcuGGU- -5'
8083 3' -55.3 NC_001978.2 + 26607 0.69 0.467397
Target:  5'- gGAGCcugGGCGuUCGgGUCGuACUCGAUCGg -3'
miRNA:   3'- -UUCG---CUGC-AGCgCAGCuUGAGCUGGU- -5'
8083 3' -55.3 NC_001978.2 + 27670 0.69 0.477679
Target:  5'- -cGCGaACGUCGUGgUGAuACUCGAUCAc -3'
miRNA:   3'- uuCGC-UGCAGCGCaGCU-UGAGCUGGU- -5'
8083 3' -55.3 NC_001978.2 + 31947 0.68 0.498568
Target:  5'- aGAGCGACaGUUGU-UCGGGCUCGAauCCGu -3'
miRNA:   3'- -UUCGCUG-CAGCGcAGCUUGAGCU--GGU- -5'
8083 3' -55.3 NC_001978.2 + 32628 0.66 0.630291
Target:  5'- cAGCGcCGUCGUGgcaaGAACaUUGACCu -3'
miRNA:   3'- uUCGCuGCAGCGCag--CUUG-AGCUGGu -5'
8083 3' -55.3 NC_001978.2 + 33826 0.68 0.488071
Target:  5'- -cGUGACGUCGCucgacuGUCGGGC-CGACg- -3'
miRNA:   3'- uuCGCUGCAGCG------CAGCUUGaGCUGgu -5'
8083 3' -55.3 NC_001978.2 + 33879 0.69 0.477679
Target:  5'- cGAGCGACGUCaCGUCGAcaaACucagguUCGACg- -3'
miRNA:   3'- -UUCGCUGCAGcGCAGCU---UG------AGCUGgu -5'
8083 3' -55.3 NC_001978.2 + 37873 0.68 0.530631
Target:  5'- gGGGCGccgucccguacaACGUCGCGcgUGAGCgggUCGGCCGg -3'
miRNA:   3'- -UUCGC------------UGCAGCGCa-GCUUG---AGCUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.