miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 5' -61.6 NC_001978.2 + 24469 0.66 0.349673
Target:  5'- uUCAgcgcuCGCaCGUCGCCCaGGG-CaGGCGCa -3'
miRNA:   3'- cAGU-----GCG-GCAGCGGG-CCCaGcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 17641 0.66 0.328871
Target:  5'- cGUCcggaGCCGUCGCCCGguacaaGGUgaccaucaacggucuUGAGUACg -3'
miRNA:   3'- -CAGug--CGGCAGCGGGC------CCA---------------GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 3852 0.66 0.325753
Target:  5'- uUCA-GUCuUCGCCCGuGGcUUGAGCGCa -3'
miRNA:   3'- cAGUgCGGcAGCGGGC-CC-AGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 39562 0.66 0.324977
Target:  5'- -cCGCuGCCGUCGCCgGaagguGGUCGAcccguccGCACc -3'
miRNA:   3'- caGUG-CGGCAGCGGgC-----CCAGCU-------CGUG- -5'
8084 5' -61.6 NC_001978.2 + 39167 0.66 0.341562
Target:  5'- --gACGCCGUgcCGaCCCGGGgCGAG-ACg -3'
miRNA:   3'- cagUGCGGCA--GC-GGGCCCaGCUCgUG- -5'
8084 5' -61.6 NC_001978.2 + 5132 0.66 0.310493
Target:  5'- cGUCacaGCGuCCGUCGCCUuaauGGcGUCGAuaccGCGCu -3'
miRNA:   3'- -CAG---UGC-GGCAGCGGG----CC-CAGCU----CGUG- -5'
8084 5' -61.6 NC_001978.2 + 37302 0.66 0.309745
Target:  5'- --aGCGCCGUcCGCCCGaugccuaGGUCuucGCACa -3'
miRNA:   3'- cagUGCGGCA-GCGGGC-------CCAGcu-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 30691 0.66 0.341562
Target:  5'- cGUC-CGCCGgagucgucUCGCCCuGGGUgGcaagcucaAGCGCa -3'
miRNA:   3'- -CAGuGCGGC--------AGCGGG-CCCAgC--------UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 32176 0.66 0.333589
Target:  5'- -aCGCGCCugaGCCgGGGUCaucacGGCACg -3'
miRNA:   3'- caGUGCGGcagCGGgCCCAGc----UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 10355 0.66 0.325753
Target:  5'- -cCACGCCGcCGCCau--UCGGGCGCc -3'
miRNA:   3'- caGUGCGGCaGCGGgcccAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 36071 0.66 0.333589
Target:  5'- uGUCGCaCacaaCGCCCGGGUCGgcGGCAg -3'
miRNA:   3'- -CAGUGcGgca-GCGGGCCCAGC--UCGUg -5'
8084 5' -61.6 NC_001978.2 + 22124 0.67 0.288634
Target:  5'- -gCGCGCUGaucugaCGCCCuacGUCGAGCACu -3'
miRNA:   3'- caGUGCGGCa-----GCGGGcc-CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 200 0.67 0.30307
Target:  5'- aGUC-CGCUGcC-CCCgucguguacgaGGGUCGAGCGCc -3'
miRNA:   3'- -CAGuGCGGCaGcGGG-----------CCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 7930 0.67 0.302335
Target:  5'- cUCACGUaCGUCgaGCCCGgaacgccGGUCGAGC-Cg -3'
miRNA:   3'- cAGUGCG-GCAG--CGGGC-------CCAGCUCGuG- -5'
8084 5' -61.6 NC_001978.2 + 24769 0.67 0.295783
Target:  5'- aGUCagaaGCGUCGggCGacggcauaCgGGGUCGAGCACg -3'
miRNA:   3'- -CAG----UGCGGCa-GCg-------GgCCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 10102 0.67 0.295783
Target:  5'- aUCaACGCCGguaaggcaguggUCGCCUGGGUgaCGucaAGCGCg -3'
miRNA:   3'- cAG-UGCGGC------------AGCGGGCCCA--GC---UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 30371 0.67 0.288634
Target:  5'- -aCGCGCCGaagcCGCCCGGcUCGcguGGCAg -3'
miRNA:   3'- caGUGCGGCa---GCGGGCCcAGC---UCGUg -5'
8084 5' -61.6 NC_001978.2 + 15519 0.67 0.288634
Target:  5'- -gUACGuuGcCGuCCCGGGUCccAGCGCg -3'
miRNA:   3'- caGUGCggCaGC-GGGCCCAGc-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 37949 0.67 0.274745
Target:  5'- --aGCGCCGgaaaaaCGgaaCCUGGGUCGuGCGCa -3'
miRNA:   3'- cagUGCGGCa-----GC---GGGCCCAGCuCGUG- -5'
8084 5' -61.6 NC_001978.2 + 25874 0.67 0.274064
Target:  5'- uUCACGCUG-CGCCUgagcgaaGGGcuugcCGGGCACg -3'
miRNA:   3'- cAGUGCGGCaGCGGG-------CCCa----GCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.