miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 5' -61.6 NC_001978.2 + 200 0.67 0.30307
Target:  5'- aGUC-CGCUGcC-CCCgucguguacgaGGGUCGAGCGCc -3'
miRNA:   3'- -CAGuGCGGCaGcGGG-----------CCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 3852 0.66 0.325753
Target:  5'- uUCA-GUCuUCGCCCGuGGcUUGAGCGCa -3'
miRNA:   3'- cAGUgCGGcAGCGGGC-CC-AGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 4684 0.71 0.142554
Target:  5'- gGUCGuCGUCGUcCGCCCGucgcugcccaccGUCGAGCACg -3'
miRNA:   3'- -CAGU-GCGGCA-GCGGGCc-----------CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 5132 0.66 0.310493
Target:  5'- cGUCacaGCGuCCGUCGCCUuaauGGcGUCGAuaccGCGCu -3'
miRNA:   3'- -CAG---UGC-GGCAGCGGG----CC-CAGCU----CGUG- -5'
8084 5' -61.6 NC_001978.2 + 7278 0.7 0.182288
Target:  5'- uGUCGaacgcCGCCGUCagaagcgaaccgGCuCCGGcGUCGAGUACg -3'
miRNA:   3'- -CAGU-----GCGGCAG------------CG-GGCC-CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 7930 0.67 0.302335
Target:  5'- cUCACGUaCGUCgaGCCCGgaacgccGGUCGAGC-Cg -3'
miRNA:   3'- cAGUGCG-GCAG--CGGGC-------CCAGCUCGuG- -5'
8084 5' -61.6 NC_001978.2 + 7957 1.09 0.000166
Target:  5'- cGUCACGCCGUCGCCCGGGUCGAGCACa -3'
miRNA:   3'- -CAGUGCGGCAGCGGGCCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 10102 0.67 0.295783
Target:  5'- aUCaACGCCGguaaggcaguggUCGCCUGGGUgaCGucaAGCGCg -3'
miRNA:   3'- cAG-UGCGGC------------AGCGGGCCCA--GC---UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 10355 0.66 0.325753
Target:  5'- -cCACGCCGcCGCCau--UCGGGCGCc -3'
miRNA:   3'- caGUGCGGCaGCGGgcccAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 11074 0.68 0.242368
Target:  5'- uUCGCGCCcaaUCGCgaaCGGGUCGGcguucgucuGCACg -3'
miRNA:   3'- cAGUGCGGc--AGCGg--GCCCAGCU---------CGUG- -5'
8084 5' -61.6 NC_001978.2 + 11295 0.72 0.132129
Target:  5'- gGUCACGCUGaCGCuuGaGGUauaCGGGCGCg -3'
miRNA:   3'- -CAGUGCGGCaGCGggC-CCA---GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 12952 0.67 0.274745
Target:  5'- aUCACGCCGUCGCacCCGuacucaaUCGAGCcCg -3'
miRNA:   3'- cAGUGCGGCAGCG--GGCcc-----AGCUCGuG- -5'
8084 5' -61.6 NC_001978.2 + 13253 0.72 0.128579
Target:  5'- cUCACGCUGaacgCGUCCGGGU--GGCACa -3'
miRNA:   3'- cAGUGCGGCa---GCGGGCCCAgcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 13284 0.69 0.207777
Target:  5'- aUUACGCCGggcgggUGCUccaugaCGGGUaCGAGCGCa -3'
miRNA:   3'- cAGUGCGGCa-----GCGG------GCCCA-GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 15006 0.67 0.274745
Target:  5'- cGUCGCGCCauacGUUGCCCGuGcCGGuacGCACg -3'
miRNA:   3'- -CAGUGCGG----CAGCGGGCcCaGCU---CGUG- -5'
8084 5' -61.6 NC_001978.2 + 15519 0.67 0.288634
Target:  5'- -gUACGuuGcCGuCCCGGGUCccAGCGCg -3'
miRNA:   3'- caGUGCggCaGC-GGGCCCAGc-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 15994 0.68 0.261395
Target:  5'- cGUCGCGCCcguGUCGCCCuuGUCGcccuucGCGCc -3'
miRNA:   3'- -CAGUGCGG---CAGCGGGccCAGCu-----CGUG- -5'
8084 5' -61.6 NC_001978.2 + 17507 0.68 0.224507
Target:  5'- -aCACGCCGUCGCCC---UC-AGCGCu -3'
miRNA:   3'- caGUGCGGCAGCGGGcccAGcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 17641 0.66 0.328871
Target:  5'- cGUCcggaGCCGUCGCCCGguacaaGGUgaccaucaacggucuUGAGUACg -3'
miRNA:   3'- -CAGug--CGGCAGCGGGC------CCA---------------GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 19015 0.68 0.248579
Target:  5'- -gCGCGuCCGgcuucagCGUgCCGGGUCGAGuCACc -3'
miRNA:   3'- caGUGC-GGCa------GCG-GGCCCAGCUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.