miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8084 5' -61.6 NC_001978.2 + 7957 1.09 0.000166
Target:  5'- cGUCACGCCGUCGCCCGGGUCGAGCACa -3'
miRNA:   3'- -CAGUGCGGCAGCGGGCCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 33899 0.73 0.106104
Target:  5'- --aACGCCGUCgGCCCGacaGUCGAGCGa -3'
miRNA:   3'- cagUGCGGCAG-CGGGCc--CAGCUCGUg -5'
8084 5' -61.6 NC_001978.2 + 13253 0.72 0.128579
Target:  5'- cUCACGCUGaacgCGUCCGGGU--GGCACa -3'
miRNA:   3'- cAGUGCGGCa---GCGGGCCCAgcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 11295 0.72 0.132129
Target:  5'- gGUCACGCUGaCGCuuGaGGUauaCGGGCGCg -3'
miRNA:   3'- -CAGUGCGGCaGCGggC-CCA---GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 4684 0.71 0.142554
Target:  5'- gGUCGuCGUCGUcCGCCCGucgcugcccaccGUCGAGCACg -3'
miRNA:   3'- -CAGU-GCGGCA-GCGGGCc-----------CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 22993 0.71 0.143327
Target:  5'- -gCGCGuuGUacCGCCCGGGUUGccgacguccuucAGCACa -3'
miRNA:   3'- caGUGCggCA--GCGGGCCCAGC------------UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 7278 0.7 0.182288
Target:  5'- uGUCGaacgcCGCCGUCagaagcgaaccgGCuCCGGcGUCGAGUACg -3'
miRNA:   3'- -CAGU-----GCGGCAG------------CG-GGCC-CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 27311 0.69 0.197231
Target:  5'- cGUCggcaGCGUCGagcaCGCCCGGGaagaaaccggCGAGCGCa -3'
miRNA:   3'- -CAG----UGCGGCa---GCGGGCCCa---------GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 23878 0.69 0.197231
Target:  5'- uUC-CGgCGaCGCC-GGGUCGAGCGCu -3'
miRNA:   3'- cAGuGCgGCaGCGGgCCCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 24835 0.69 0.199302
Target:  5'- -gUAUGCCGUCGCCCgacgcuucugacucaGGGUguGGCGCu -3'
miRNA:   3'- caGUGCGGCAGCGGG---------------CCCAgcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 13284 0.69 0.207777
Target:  5'- aUUACGCCGggcgggUGCUccaugaCGGGUaCGAGCGCa -3'
miRNA:   3'- cAGUGCGGCa-----GCGG------GCCCA-GCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 20523 0.69 0.213231
Target:  5'- uUgACGCCGUC-CuuGaucaGGUCGGGCACg -3'
miRNA:   3'- cAgUGCGGCAGcGggC----CCAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 35754 0.69 0.218807
Target:  5'- --aACGCCGUCGCCCaGcUCGAcCACu -3'
miRNA:   3'- cagUGCGGCAGCGGGcCcAGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 35380 0.68 0.224507
Target:  5'- --aGCGCCGUCG-CUGGGUgGAcGUACu -3'
miRNA:   3'- cagUGCGGCAGCgGGCCCAgCU-CGUG- -5'
8084 5' -61.6 NC_001978.2 + 17507 0.68 0.224507
Target:  5'- -aCACGCCGUCGCCC---UC-AGCGCu -3'
miRNA:   3'- caGUGCGGCAGCGGGcccAGcUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26073 0.68 0.224507
Target:  5'- aGUCGCGCacCGUaccggCGCCguucaGGuGUCGAGCACu -3'
miRNA:   3'- -CAGUGCG--GCA-----GCGGg----CC-CAGCUCGUG- -5'
8084 5' -61.6 NC_001978.2 + 26303 0.68 0.230333
Target:  5'- gGUCACGCCGUCccacacgaaguaGCCCaGGcCGGaCGCg -3'
miRNA:   3'- -CAGUGCGGCAG------------CGGGcCCaGCUcGUG- -5'
8084 5' -61.6 NC_001978.2 + 31484 0.68 0.236286
Target:  5'- -gCACGCUuUCGCgucCCGGGUUGcGGCGCu -3'
miRNA:   3'- caGUGCGGcAGCG---GGCCCAGC-UCGUG- -5'
8084 5' -61.6 NC_001978.2 + 11074 0.68 0.242368
Target:  5'- uUCGCGCCcaaUCGCgaaCGGGUCGGcguucgucuGCACg -3'
miRNA:   3'- cAGUGCGGc--AGCGg--GCCCAGCU---------CGUG- -5'
8084 5' -61.6 NC_001978.2 + 19015 0.68 0.248579
Target:  5'- -gCGCGuCCGgcuucagCGUgCCGGGUCGAGuCACc -3'
miRNA:   3'- caGUGC-GGCa------GCG-GGCCCAGCUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.