miRNA display CGI

Results 41 - 47 of 47 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8087	3'	-58.4	NC_001978.2	+	34140	0.72	0.200297
	Target:  5'- gGUgu-GCgUCcGCCGGAG-CGUGCCCa -3' miRNA:   3'- -CGaauCGgAGuCGGCCUCaGCGCGGG- -5'
8087	3'	-58.4	NC_001978.2	+	34481	0.69	0.3026
	Target:  5'- ----cGCUUCGGCCGuGAuucGcCGCGCCCc -3' miRNA:   3'- cgaauCGGAGUCGGC-CU---CaGCGCGGG- -5'
8087	3'	-58.4	NC_001978.2	+	35561	0.66	0.480464
	Target:  5'- ----cGCCggaugUCgAGCCGGAGaCGgCGCCCc -3' miRNA:   3'- cgaauCGG-----AG-UCGGCCUCaGC-GCGGG- -5'
8087	3'	-58.4	NC_001978.2	+	36598	0.71	0.216872
	Target:  5'- cGCUUGugauGCUUCucGCCGaAGUCGgGCCCg -3' miRNA:   3'- -CGAAU----CGGAGu-CGGCcUCAGCgCGGG- -5'
8087	3'	-58.4	NC_001978.2	+	36710	0.71	0.247098
	Target:  5'- gGCggAGCCUgAgcccgucacggaGCCGGAGaCGgCGCCCc -3' miRNA:   3'- -CGaaUCGGAgU------------CGGCCUCaGC-GCGGG- -5'
8087	3'	-58.4	NC_001978.2	+	36781	0.69	0.295167
	Target:  5'- cGCcggAGCCUgAGCCGGAGcC-UGCCg -3' miRNA:   3'- -CGaa-UCGGAgUCGGCCUCaGcGCGGg -5'
8087	3'	-58.4	NC_001978.2	+	38171	0.66	0.490674
	Target:  5'- gGCgcGGCUUCcccguGCCGGAGcaauCGCCCu -3' miRNA:   3'- -CGaaUCGGAGu----CGGCCUCagc-GCGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home