miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8090 3' -54.7 NC_001978.2 + 7885 0.67 0.567354
Target:  5'- uUCCGUGuGCucgACCCGggcgacggcgugacGCCCGCAAUCAa -3'
miRNA:   3'- cGGGUAUuCG---UGGGU--------------UGGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 40866 0.67 0.566235
Target:  5'- cGCCCGgcuucuuauugaaGAGCGCUCGACCCuCAaugacGCCGa -3'
miRNA:   3'- -CGGGUa------------UUCGUGGGUUGGGcGU-----UGGU- -5'
8090 3' -54.7 NC_001978.2 + 25869 0.67 0.563998
Target:  5'- aGCCCuucagaccuuCGgCCAGCuCCGCGACCAa -3'
miRNA:   3'- -CGGGuauuc-----GUgGGUUG-GGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 17756 0.67 0.55953
Target:  5'- -aCC-UGGGCGCCaCGugcCCCGUAGCCGu -3'
miRNA:   3'- cgGGuAUUCGUGG-GUu--GGGCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 11204 0.67 0.55953
Target:  5'- aCCCAUGacaAGCcCCCGauACUCGCAuguCCAg -3'
miRNA:   3'- cGGGUAU---UCGuGGGU--UGGGCGUu--GGU- -5'
8090 3' -54.7 NC_001978.2 + 33206 0.67 0.55953
Target:  5'- -gCCGUA-GCGCCCAACuCCGUucaggacauGCCGa -3'
miRNA:   3'- cgGGUAUuCGUGGGUUG-GGCGu--------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 34660 0.68 0.548407
Target:  5'- aGCCCcguuGCACCCGGCaCgguucggagUGCGACCGg -3'
miRNA:   3'- -CGGGuauuCGUGGGUUG-G---------GCGUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 25505 0.68 0.548407
Target:  5'- aGCCCc--AGCGCCuCAGCCUggGCGACg- -3'
miRNA:   3'- -CGGGuauUCGUGG-GUUGGG--CGUUGgu -5'
8090 3' -54.7 NC_001978.2 + 25706 0.68 0.537354
Target:  5'- -gCCAUAcGGCGCCCAGCgCUGCccguCCGg -3'
miRNA:   3'- cgGGUAU-UCGUGGGUUG-GGCGuu--GGU- -5'
8090 3' -54.7 NC_001978.2 + 30981 0.68 0.536253
Target:  5'- uUCCAUGucGCACCCGucaccguGCCCGUAgucggucacGCCAc -3'
miRNA:   3'- cGGGUAUu-CGUGGGU-------UGGGCGU---------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 15233 0.68 0.526379
Target:  5'- aCCCAggUAAGUACCCGugACCCGUAc--- -3'
miRNA:   3'- cGGGU--AUUCGUGGGU--UGGGCGUuggu -5'
8090 3' -54.7 NC_001978.2 + 21542 0.68 0.504691
Target:  5'- cGCCU--GAGCGCCCGucUCCGCccCCAa -3'
miRNA:   3'- -CGGGuaUUCGUGGGUu-GGGCGuuGGU- -5'
8090 3' -54.7 NC_001978.2 + 39206 0.69 0.472915
Target:  5'- -aCCGcuucAAGCGCCUggGACCCGgCAACCGu -3'
miRNA:   3'- cgGGUa---UUCGUGGG--UUGGGC-GUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 805 0.69 0.472915
Target:  5'- cGCCCAggcgccgGAGCACUCGACCCauuCGgacACCu -3'
miRNA:   3'- -CGGGUa------UUCGUGGGUUGGGc--GU---UGGu -5'
8090 3' -54.7 NC_001978.2 + 13354 0.69 0.462547
Target:  5'- aCCCGUcaugGAGCACCCGcCCgGCGuaauagcuguGCCAc -3'
miRNA:   3'- cGGGUA----UUCGUGGGUuGGgCGU----------UGGU- -5'
8090 3' -54.7 NC_001978.2 + 18099 0.69 0.4523
Target:  5'- cGUCCAcUGGGCACCCGGaCCG-GACCGg -3'
miRNA:   3'- -CGGGU-AUUCGUGGGUUgGGCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 369 0.7 0.432185
Target:  5'- gGUCCGUGucgggggaguaGGCGCCCAuACCgGCuuGCCAc -3'
miRNA:   3'- -CGGGUAU-----------UCGUGGGU-UGGgCGu-UGGU- -5'
8090 3' -54.7 NC_001978.2 + 36665 0.7 0.406835
Target:  5'- aGCCC-UGAGCGCCCcugagccggucgcggAACCUG-AGCCGg -3'
miRNA:   3'- -CGGGuAUUCGUGGG---------------UUGGGCgUUGGU- -5'
8090 3' -54.7 NC_001978.2 + 35643 0.7 0.393577
Target:  5'- gGCUUGUAcAGCGCCCAGCUCGaccccgaaGACCGg -3'
miRNA:   3'- -CGGGUAU-UCGUGGGUUGGGCg-------UUGGU- -5'
8090 3' -54.7 NC_001978.2 + 12508 0.7 0.384281
Target:  5'- uCCCGUAAGcCGCCUGAUCCGUguacuGACCc -3'
miRNA:   3'- cGGGUAUUC-GUGGGUUGGGCG-----UUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.