Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8090 | 3' | -54.7 | NC_001978.2 | + | 6410 | 0.71 | 0.376039 |
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Target: 5'- uGCCCAggcugggggaaauuGGCGCCCGACgUCGCuGCCu -3' miRNA: 3'- -CGGGUau------------UCGUGGGUUG-GGCGuUGGu -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 36446 | 0.71 | 0.366129 |
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Target: 5'- aGCCC---AGCACCCAGCCgG--ACCAu -3' miRNA: 3'- -CGGGuauUCGUGGGUUGGgCguUGGU- -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 31401 | 0.71 | 0.348577 |
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Target: 5'- aGCUCAgcggaaGAGCGCCgCAACCCGgGACgCGa -3' miRNA: 3'- -CGGGUa-----UUCGUGG-GUUGGGCgUUG-GU- -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 210 | 0.72 | 0.329145 |
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Target: 5'- cCCCGUcguguacgagggucGAGCGCCCcguguGCCCGCGcACCu -3' miRNA: 3'- cGGGUA--------------UUCGUGGGu----UGGGCGU-UGGu -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 16230 | 0.72 | 0.291961 |
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Target: 5'- aGCCCGUcGGUGCCCAGCgUgGCAacGCCGg -3' miRNA: 3'- -CGGGUAuUCGUGGGUUG-GgCGU--UGGU- -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 35274 | 0.73 | 0.255419 |
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Target: 5'- cGCCCGUGuccuuccGGCGCCCGaugauccugaACCCGUcguACCGg -3' miRNA: 3'- -CGGGUAU-------UCGUGGGU----------UGGGCGu--UGGU- -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 33055 | 0.75 | 0.200718 |
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Target: 5'- cGCCCGUGcGCuacuGCCCAACgCCGC-GCCGg -3' miRNA: 3'- -CGGGUAUuCG----UGGGUUG-GGCGuUGGU- -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 5433 | 0.77 | 0.14743 |
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Target: 5'- uCCCGgcGGuCGCCCGACCCGUGAUCAc -3' miRNA: 3'- cGGGUauUC-GUGGGUUGGGCGUUGGU- -5' |
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| 8090 | 3' | -54.7 | NC_001978.2 | + | 10314 | 1.11 | 0.000542 |
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Target: 5'- cGCCCAUAAGCACCCAACCCGCAACCAc -3' miRNA: 3'- -CGGGUAUUCGUGGGUUGGGCGUUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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