Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8090 | 3' | -54.7 | NC_001978.2 | + | 36446 | 0.71 | 0.366129 |
Target: 5'- aGCCC---AGCACCCAGCCgG--ACCAu -3' miRNA: 3'- -CGGGuauUCGUGGGUUGGgCguUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 11204 | 0.67 | 0.55953 |
Target: 5'- aCCCAUGacaAGCcCCCGauACUCGCAuguCCAg -3' miRNA: 3'- cGGGUAU---UCGuGGGU--UGGGCGUu--GGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 12508 | 0.7 | 0.384281 |
Target: 5'- uCCCGUAAGcCGCCUGAUCCGUguacuGACCc -3' miRNA: 3'- cGGGUAUUC-GUGGGUUGGGCG-----UUGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 16230 | 0.72 | 0.291961 |
Target: 5'- aGCCCGUcGGUGCCCAGCgUgGCAacGCCGg -3' miRNA: 3'- -CGGGUAuUCGUGGGUUG-GgCGU--UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 35274 | 0.73 | 0.255419 |
Target: 5'- cGCCCGUGuccuuccGGCGCCCGaugauccugaACCCGUcguACCGg -3' miRNA: 3'- -CGGGUAU-------UCGUGGGU----------UGGGCGu--UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 10314 | 1.11 | 0.000542 |
Target: 5'- cGCCCAUAAGCACCCAACCCGCAACCAc -3' miRNA: 3'- -CGGGUAUUCGUGGGUUGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 369 | 0.7 | 0.432185 |
Target: 5'- gGUCCGUGucgggggaguaGGCGCCCAuACCgGCuuGCCAc -3' miRNA: 3'- -CGGGUAU-----------UCGUGGGU-UGGgCGu-UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 5433 | 0.77 | 0.14743 |
Target: 5'- uCCCGgcGGuCGCCCGACCCGUGAUCAc -3' miRNA: 3'- cGGGUauUC-GUGGGUUGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 31401 | 0.71 | 0.348577 |
Target: 5'- aGCUCAgcggaaGAGCGCCgCAACCCGgGACgCGa -3' miRNA: 3'- -CGGGUa-----UUCGUGG-GUUGGGCgUUG-GU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 35643 | 0.7 | 0.393577 |
Target: 5'- gGCUUGUAcAGCGCCCAGCUCGaccccgaaGACCGg -3' miRNA: 3'- -CGGGUAU-UCGUGGGUUGGGCg-------UUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 36665 | 0.7 | 0.406835 |
Target: 5'- aGCCC-UGAGCGCCCcugagccggucgcggAACCUG-AGCCGg -3' miRNA: 3'- -CGGGuAUUCGUGGG---------------UUGGGCgUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 805 | 0.69 | 0.472915 |
Target: 5'- cGCCCAggcgccgGAGCACUCGACCCauuCGgacACCu -3' miRNA: 3'- -CGGGUa------UUCGUGGGUUGGGc--GU---UGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 34660 | 0.68 | 0.548407 |
Target: 5'- aGCCCcguuGCACCCGGCaCgguucggagUGCGACCGg -3' miRNA: 3'- -CGGGuauuCGUGGGUUG-G---------GCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33206 | 0.67 | 0.55953 |
Target: 5'- -gCCGUA-GCGCCCAACuCCGUucaggacauGCCGa -3' miRNA: 3'- cgGGUAUuCGUGGGUUG-GGCGu--------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 7885 | 0.67 | 0.567354 |
Target: 5'- uUCCGUGuGCucgACCCGggcgacggcgugacGCCCGCAAUCAa -3' miRNA: 3'- cGGGUAUuCG---UGGGU--------------UGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 30372 | 0.67 | 0.581955 |
Target: 5'- cGCgCcgAAGcCGCCCGGCUCGCGuggcaggguGCCGu -3' miRNA: 3'- -CGgGuaUUC-GUGGGUUGGGCGU---------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 732 | 0.67 | 0.609091 |
Target: 5'- cGCCCuuguuggcGUAGGCGCCgAaggugaagccgacgaGCCgGUAACCGu -3' miRNA: 3'- -CGGG--------UAUUCGUGGgU---------------UGGgCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 16456 | 0.66 | 0.661318 |
Target: 5'- aCCCGguugcgAAGUAUCUGACuCCGCAGCg- -3' miRNA: 3'- cGGGUa-----UUCGUGGGUUG-GGCGUUGgu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 19862 | 0.66 | 0.6159 |
Target: 5'- uGCgCAUuGGCGCCguGCCgGgGGCCGa -3' miRNA: 3'- -CGgGUAuUCGUGGguUGGgCgUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 30847 | 0.66 | 0.649978 |
Target: 5'- aGUCCAUGGGCGCCacuCagCGCGACa- -3' miRNA: 3'- -CGGGUAUUCGUGGguuGg-GCGUUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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