Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8090 | 3' | -54.7 | NC_001978.2 | + | 1220 | 0.65 | 0.669239 |
Target: 5'- aGCCCcgAAGaugaacgccaacgcCAcCCCGACCCGguACUu -3' miRNA: 3'- -CGGGuaUUC--------------GU-GGGUUGGGCguUGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 30981 | 0.68 | 0.536253 |
Target: 5'- uUCCAUGucGCACCCGucaccguGCCCGUAgucggucacGCCAc -3' miRNA: 3'- cGGGUAUu-CGUGGGU-------UGGGCGU---------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 13354 | 0.69 | 0.462547 |
Target: 5'- aCCCGUcaugGAGCACCCGcCCgGCGuaauagcuguGCCAc -3' miRNA: 3'- cGGGUA----UUCGUGGGUuGGgCGU----------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 10314 | 1.11 | 0.000542 |
Target: 5'- cGCCCAUAAGCACCCAACCCGCAACCAc -3' miRNA: 3'- -CGGGUAUUCGUGGGUUGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 18613 | 0.66 | 0.638621 |
Target: 5'- uGCCCGacUGAGCGC---GCCCGauaaGACCGa -3' miRNA: 3'- -CGGGU--AUUCGUGgguUGGGCg---UUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 12208 | 0.66 | 0.6159 |
Target: 5'- uGCCCccgAUAAGgACCguGCcggagccgaCCGCAACCGu -3' miRNA: 3'- -CGGG---UAUUCgUGGguUG---------GGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 9162 | 0.67 | 0.604556 |
Target: 5'- aCCCA--GGCGCUUAGCCU-CAGCCGg -3' miRNA: 3'- cGGGUauUCGUGGGUUGGGcGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33504 | 0.67 | 0.604556 |
Target: 5'- gGCUCAgc-GCGCggucuuucuUCGGCCCGUAGCCGu -3' miRNA: 3'- -CGGGUauuCGUG---------GGUUGGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 40866 | 0.67 | 0.566235 |
Target: 5'- cGCCCGgcuucuuauugaaGAGCGCUCGACCCuCAaugacGCCGa -3' miRNA: 3'- -CGGGUa------------UUCGUGGGUUGGGcGU-----UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 25706 | 0.68 | 0.537354 |
Target: 5'- -gCCAUAcGGCGCCCAGCgCUGCccguCCGg -3' miRNA: 3'- cgGGUAU-UCGUGGGUUG-GGCGuu--GGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 17756 | 0.67 | 0.55953 |
Target: 5'- -aCC-UGGGCGCCaCGugcCCCGUAGCCGu -3' miRNA: 3'- cgGGuAUUCGUGG-GUu--GGGCGUUGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 3227 | 0.67 | 0.569595 |
Target: 5'- gGCCCAUAc-CGCCCGGCUCaGCGuucggauagucgaGCCAu -3' miRNA: 3'- -CGGGUAUucGUGGGUUGGG-CGU-------------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 40304 | 0.66 | 0.661318 |
Target: 5'- cGCCCGUcucAGCGCCUAACagGCuuCCc -3' miRNA: 3'- -CGGGUAu--UCGUGGGUUGggCGuuGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 11204 | 0.67 | 0.55953 |
Target: 5'- aCCCAUGacaAGCcCCCGauACUCGCAuguCCAg -3' miRNA: 3'- cGGGUAU---UCGuGGGU--UGGGCGUu--GGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 29198 | 0.66 | 0.654517 |
Target: 5'- aCCCGUGacggacacagugacaAGC-CCCGugCCGCGcgcuucacgcuGCCAa -3' miRNA: 3'- cGGGUAU---------------UCGuGGGUugGGCGU-----------UGGU- -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 15998 | 0.67 | 0.570716 |
Target: 5'- cGCCCGUc-GCGCCCGugUCGCccuugucGCCc -3' miRNA: 3'- -CGGGUAuuCGUGGGUugGGCGu------UGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 25505 | 0.68 | 0.548407 |
Target: 5'- aGCCCc--AGCGCCuCAGCCUggGCGACg- -3' miRNA: 3'- -CGGGuauUCGUGG-GUUGGG--CGUUGgu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 15233 | 0.68 | 0.526379 |
Target: 5'- aCCCAggUAAGUACCCGugACCCGUAc--- -3' miRNA: 3'- cGGGU--AUUCGUGGGU--UGGGCGUuggu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 19747 | 0.66 | 0.649978 |
Target: 5'- gGCCCAguccauGCCCAGCgCGCgAGCCu -3' miRNA: 3'- -CGGGUauucg-UGGGUUGgGCG-UUGGu -5' |
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8090 | 3' | -54.7 | NC_001978.2 | + | 33235 | 0.66 | 0.6159 |
Target: 5'- -----cGAGCACCCGACCgGCGAacucCCGa -3' miRNA: 3'- cggguaUUCGUGGGUUGGgCGUU----GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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