miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 3' -56 NC_001978.2 + 39429 0.67 0.519054
Target:  5'- gGUugGACGGCaGGggGCGCGgcaaggGGCUUu -3'
miRNA:   3'- -CGugUUGCCGgCCuuCGUGU------UCGGGu -5'
8091 3' -56 NC_001978.2 + 38961 0.69 0.38568
Target:  5'- cGCGCAACGGCCGaauGGUcaaugucgucaucaACAAGCUUg -3'
miRNA:   3'- -CGUGUUGCCGGCcu-UCG--------------UGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 37501 0.68 0.423447
Target:  5'- uGCGCAugaagcuugugaccgAUGGCCGGuuugaagucgagcggGGGCGCAccugggaAGCCCGc -3'
miRNA:   3'- -CGUGU---------------UGCCGGCC---------------UUCGUGU-------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 37415 0.68 0.466417
Target:  5'- gGCACuGACcGCCGGAGuGCGCuccGCCUAc -3'
miRNA:   3'- -CGUG-UUGcCGGCCUU-CGUGuu-CGGGU- -5'
8091 3' -56 NC_001978.2 + 35475 0.7 0.327607
Target:  5'- cGCAgCAACGGCguucggccUGGGAGCGCucGCCUu -3'
miRNA:   3'- -CGU-GUUGCCG--------GCCUUCGUGuuCGGGu -5'
8091 3' -56 NC_001978.2 + 33414 0.66 0.551742
Target:  5'- aCugAACGGCgGGuacGGCuACGGGCCgAa -3'
miRNA:   3'- cGugUUGCCGgCCu--UCG-UGUUCGGgU- -5'
8091 3' -56 NC_001978.2 + 33026 0.8 0.077649
Target:  5'- -gGCuACGGCCGGAAGCA--AGCCCGc -3'
miRNA:   3'- cgUGuUGCCGGCCUUCGUguUCGGGU- -5'
8091 3' -56 NC_001978.2 + 32991 0.68 0.456219
Target:  5'- cGUACGAC-GCUGGGgugaAGCuucuuCGAGCCCGg -3'
miRNA:   3'- -CGUGUUGcCGGCCU----UCGu----GUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 32981 0.68 0.426368
Target:  5'- cCGCgAAUGGCaGGggGCACGaccGGCUCAg -3'
miRNA:   3'- cGUG-UUGCCGgCCuuCGUGU---UCGGGU- -5'
8091 3' -56 NC_001978.2 + 32152 0.74 0.196844
Target:  5'- gGCACGGuCGGCCGGAacGGCAauacugaucuuGCCCGg -3'
miRNA:   3'- -CGUGUU-GCCGGCCU--UCGUguu--------CGGGU- -5'
8091 3' -56 NC_001978.2 + 29748 0.66 0.562781
Target:  5'- aGCACGACGGaCCGGAAcugauCACcc-CCCGu -3'
miRNA:   3'- -CGUGUUGCC-GGCCUUc----GUGuucGGGU- -5'
8091 3' -56 NC_001978.2 + 28292 0.67 0.508325
Target:  5'- -aGCGuCGGCCGGAuGCuCAGGCgCGc -3'
miRNA:   3'- cgUGUuGCCGGCCUuCGuGUUCGgGU- -5'
8091 3' -56 NC_001978.2 + 28084 0.68 0.476732
Target:  5'- -aACGGCGGucuuCCGGucGCugGGGCUCAc -3'
miRNA:   3'- cgUGUUGCC----GGCCuuCGugUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 27311 0.67 0.529871
Target:  5'- cCGCGAUuggugugaGGCUGaGggGCugAAGUCCAc -3'
miRNA:   3'- cGUGUUG--------CCGGC-CuuCGugUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 26789 0.68 0.436191
Target:  5'- aGgGCAACGG-CGGggGCAUu--CCCAa -3'
miRNA:   3'- -CgUGUUGCCgGCCuuCGUGuucGGGU- -5'
8091 3' -56 NC_001978.2 + 26391 0.7 0.360601
Target:  5'- cGCGCGAcucCGGCaggcaacCGGcGAGCACAAGCgCCGc -3'
miRNA:   3'- -CGUGUU---GCCG-------GCC-UUCGUGUUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 26196 0.73 0.215919
Target:  5'- gGCAUggacuGACGGCCGGAucaAGUACGcGUCCGg -3'
miRNA:   3'- -CGUG-----UUGCCGGCCU---UCGUGUuCGGGU- -5'
8091 3' -56 NC_001978.2 + 24998 0.66 0.573879
Target:  5'- uGCACuucGCGcacGCCGGAAGCAUGuuguGCgCAg -3'
miRNA:   3'- -CGUGu--UGC---CGGCCUUCGUGUu---CGgGU- -5'
8091 3' -56 NC_001978.2 + 23962 0.66 0.551742
Target:  5'- aGCGCGACGGgcuuCCGGcGGGUACu-GCCaCAg -3'
miRNA:   3'- -CGUGUUGCC----GGCC-UUCGUGuuCGG-GU- -5'
8091 3' -56 NC_001978.2 + 22911 0.66 0.573879
Target:  5'- cGCGCGAcuagggucCGGCCGGAccaauccCACAccugAGCCCc -3'
miRNA:   3'- -CGUGUU--------GCCGGCCUuc-----GUGU----UCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.