miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 3' -56 NC_001978.2 + 1984 0.66 0.595095
Target:  5'- cGCACAguGCGGCaaaGGGuccgucgGGguCGGGUCCGg -3'
miRNA:   3'- -CGUGU--UGCCGg--CCU-------UCguGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 9268 0.69 0.388435
Target:  5'- uCGCucCGGCCGGA---ACGAGCCCc -3'
miRNA:   3'- cGUGuuGCCGGCCUucgUGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 413 0.68 0.426368
Target:  5'- gGCGCGACGGUCGuGAAGCucgcaguaacGCAagaucacguuccGGUCCGu -3'
miRNA:   3'- -CGUGUUGCCGGC-CUUCG----------UGU------------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 1843 0.68 0.456219
Target:  5'- aCACAGCGGCaGGGuu--CAAGCCCu -3'
miRNA:   3'- cGUGUUGCCGgCCUucguGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 14281 0.67 0.497691
Target:  5'- -gACAA-GGCCGGucacguuCGCGAGCCCGc -3'
miRNA:   3'- cgUGUUgCCGGCCuuc----GUGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 7168 0.67 0.497691
Target:  5'- uGCAUAcCGGcCCGGAAGCcgACAgacucaaucGGCUCGa -3'
miRNA:   3'- -CGUGUuGCC-GGCCUUCG--UGU---------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 11670 1.1 0.000418
Target:  5'- gGCACAACGGCCGGAAGCACAAGCCCAg -3'
miRNA:   3'- -CGUGUUGCCGGCCUUCGUGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 32152 0.74 0.196844
Target:  5'- gGCACGGuCGGCCGGAacGGCAauacugaucuuGCCCGg -3'
miRNA:   3'- -CGUGUU-GCCGGCCU--UCGUguu--------CGGGU- -5'
8091 3' -56 NC_001978.2 + 26391 0.7 0.360601
Target:  5'- cGCGCGAcucCGGCaggcaacCGGcGAGCACAAGCgCCGc -3'
miRNA:   3'- -CGUGUU---GCCG-------GCC-UUCGUGUUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 3072 0.68 0.425393
Target:  5'- aGCGCGucauGCGgagugaccgucucGCCGGAAGCcGCAAcggcGCCCAg -3'
miRNA:   3'- -CGUGU----UGC-------------CGGCCUUCG-UGUU----CGGGU- -5'
8091 3' -56 NC_001978.2 + 13222 0.68 0.476732
Target:  5'- cCACAA-GGCCGGAAcGCcCAGGCUgAa -3'
miRNA:   3'- cGUGUUgCCGGCCUU-CGuGUUCGGgU- -5'
8091 3' -56 NC_001978.2 + 24998 0.66 0.573879
Target:  5'- uGCACuucGCGcacGCCGGAAGCAUGuuguGCgCAg -3'
miRNA:   3'- -CGUGu--UGC---CGGCCUUCGUGUu---CGgGU- -5'
8091 3' -56 NC_001978.2 + 4525 0.71 0.303783
Target:  5'- uCGCAGCGuGCCGGAAG-ACGugcGCCCc -3'
miRNA:   3'- cGUGUUGC-CGGCCUUCgUGUu--CGGGu -5'
8091 3' -56 NC_001978.2 + 23962 0.66 0.551742
Target:  5'- aGCGCGACGGgcuuCCGGcGGGUACu-GCCaCAg -3'
miRNA:   3'- -CGUGUUGCC----GGCC-UUCGUGuuCGG-GU- -5'
8091 3' -56 NC_001978.2 + 32981 0.68 0.426368
Target:  5'- cCGCgAAUGGCaGGggGCACGaccGGCUCAg -3'
miRNA:   3'- cGUG-UUGCCGgCCuuCGUGU---UCGGGU- -5'
8091 3' -56 NC_001978.2 + 4205 0.71 0.281314
Target:  5'- gGCuCAAUGGCUGGggGagcggggGCAGGCUCAg -3'
miRNA:   3'- -CGuGUUGCCGGCCuuCg------UGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 28292 0.67 0.508325
Target:  5'- -aGCGuCGGCCGGAuGCuCAGGCgCGc -3'
miRNA:   3'- cgUGUuGCCGGCCUuCGuGUUCGgGU- -5'
8091 3' -56 NC_001978.2 + 1008 0.7 0.361477
Target:  5'- aGCGCGACGaagccGCCGG-AGUcgACAAGCCg- -3'
miRNA:   3'- -CGUGUUGC-----CGGCCuUCG--UGUUCGGgu -5'
8091 3' -56 NC_001978.2 + 8812 0.68 0.426368
Target:  5'- aGCGCGcCGGUCGGGggcgaagcgggGGCACuGAGCgCCGc -3'
miRNA:   3'- -CGUGUuGCCGGCCU-----------UCGUG-UUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 37501 0.68 0.423447
Target:  5'- uGCGCAugaagcuugugaccgAUGGCCGGuuugaagucgagcggGGGCGCAccugggaAGCCCGc -3'
miRNA:   3'- -CGUGU---------------UGCCGGCC---------------UUCGUGU-------UCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.