Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8091 | 3' | -56 | NC_001978.2 | + | 13222 | 0.68 | 0.476732 |
Target: 5'- cCACAA-GGCCGGAAcGCcCAGGCUgAa -3' miRNA: 3'- cGUGUUgCCGGCCUU-CGuGUUCGGgU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 1843 | 0.68 | 0.456219 |
Target: 5'- aCACAGCGGCaGGGuu--CAAGCCCu -3' miRNA: 3'- cGUGUUGCCGgCCUucguGUUCGGGu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 413 | 0.68 | 0.426368 |
Target: 5'- gGCGCGACGGUCGuGAAGCucgcaguaacGCAagaucacguuccGGUCCGu -3' miRNA: 3'- -CGUGUUGCCGGC-CUUCG----------UGU------------UCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 3072 | 0.68 | 0.425393 |
Target: 5'- aGCGCGucauGCGgagugaccgucucGCCGGAAGCcGCAAcggcGCCCAg -3' miRNA: 3'- -CGUGU----UGC-------------CGGCCUUCG-UGUU----CGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 32991 | 0.68 | 0.456219 |
Target: 5'- cGUACGAC-GCUGGGgugaAGCuucuuCGAGCCCGg -3' miRNA: 3'- -CGUGUUGcCGGCCU----UCGu----GUUCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 37415 | 0.68 | 0.466417 |
Target: 5'- gGCACuGACcGCCGGAGuGCGCuccGCCUAc -3' miRNA: 3'- -CGUG-UUGcCGGCCUU-CGUGuu-CGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 28084 | 0.68 | 0.476732 |
Target: 5'- -aACGGCGGucuuCCGGucGCugGGGCUCAc -3' miRNA: 3'- cgUGUUGCC----GGCCuuCGugUUCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 32981 | 0.68 | 0.426368 |
Target: 5'- cCGCgAAUGGCaGGggGCACGaccGGCUCAg -3' miRNA: 3'- cGUG-UUGCCGgCCuuCGUGU---UCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 26789 | 0.68 | 0.436191 |
Target: 5'- aGgGCAACGG-CGGggGCAUu--CCCAa -3' miRNA: 3'- -CgUGUUGCCgGCCuuCGUGuucGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 8812 | 0.68 | 0.426368 |
Target: 5'- aGCGCGcCGGUCGGGggcgaagcgggGGCACuGAGCgCCGc -3' miRNA: 3'- -CGUGUuGCCGGCCU-----------UCGUG-UUCG-GGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 37501 | 0.68 | 0.423447 |
Target: 5'- uGCGCAugaagcuugugaccgAUGGCCGGuuugaagucgagcggGGGCGCAccugggaAGCCCGc -3' miRNA: 3'- -CGUGU---------------UGCCGGCC---------------UUCGUGU-------UCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 20681 | 0.68 | 0.456219 |
Target: 5'- cGUugAGCGGCaGGggGCGCAcaacuCCCu -3' miRNA: 3'- -CGugUUGCCGgCCuuCGUGUuc---GGGu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 14281 | 0.67 | 0.497691 |
Target: 5'- -gACAA-GGCCGGucacguuCGCGAGCCCGc -3' miRNA: 3'- cgUGUUgCCGGCCuuc----GUGUUCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 18822 | 0.67 | 0.491359 |
Target: 5'- cGCGCGGCGuuccccgcuaucgacGCUGcGGAGCGCcuGAGCCUg -3' miRNA: 3'- -CGUGUUGC---------------CGGC-CUUCGUG--UUCGGGu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 28292 | 0.67 | 0.508325 |
Target: 5'- -aGCGuCGGCCGGAuGCuCAGGCgCGc -3' miRNA: 3'- cgUGUuGCCGGCCUuCGuGUUCGgGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 39429 | 0.67 | 0.519054 |
Target: 5'- gGUugGACGGCaGGggGCGCGgcaaggGGCUUu -3' miRNA: 3'- -CGugUUGCCGgCCuuCGUGU------UCGGGu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 19813 | 0.67 | 0.508325 |
Target: 5'- gGCACcAUGGCCacgaaGAAGCugAAGCUgAa -3' miRNA: 3'- -CGUGuUGCCGGc----CUUCGugUUCGGgU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 20206 | 0.67 | 0.515826 |
Target: 5'- gGCACGucgacaacaucaagACGGCCGaGAcGGUugAGGCCg- -3' miRNA: 3'- -CGUGU--------------UGCCGGC-CU-UCGugUUCGGgu -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 27311 | 0.67 | 0.529871 |
Target: 5'- cCGCGAUuggugugaGGCUGaGggGCugAAGUCCAc -3' miRNA: 3'- cGUGUUG--------CCGGC-CuuCGugUUCGGGU- -5' |
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8091 | 3' | -56 | NC_001978.2 | + | 2898 | 0.67 | 0.529871 |
Target: 5'- uGCACucuuCGGgCGGggGCACu--CCCc -3' miRNA: 3'- -CGUGuu--GCCgGCCuuCGUGuucGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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