miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 3' -56 NC_001978.2 + 37501 0.68 0.423447
Target:  5'- uGCGCAugaagcuugugaccgAUGGCCGGuuugaagucgagcggGGGCGCAccugggaAGCCCGc -3'
miRNA:   3'- -CGUGU---------------UGCCGGCC---------------UUCGUGU-------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 3072 0.68 0.425393
Target:  5'- aGCGCGucauGCGgagugaccgucucGCCGGAAGCcGCAAcggcGCCCAg -3'
miRNA:   3'- -CGUGU----UGC-------------CGGCCUUCG-UGUU----CGGGU- -5'
8091 3' -56 NC_001978.2 + 413 0.68 0.426368
Target:  5'- gGCGCGACGGUCGuGAAGCucgcaguaacGCAagaucacguuccGGUCCGu -3'
miRNA:   3'- -CGUGUUGCCGGC-CUUCG----------UGU------------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 32981 0.68 0.426368
Target:  5'- cCGCgAAUGGCaGGggGCACGaccGGCUCAg -3'
miRNA:   3'- cGUG-UUGCCGgCCuuCGUGU---UCGGGU- -5'
8091 3' -56 NC_001978.2 + 8812 0.68 0.426368
Target:  5'- aGCGCGcCGGUCGGGggcgaagcgggGGCACuGAGCgCCGc -3'
miRNA:   3'- -CGUGUuGCCGGCCU-----------UCGUG-UUCG-GGU- -5'
8091 3' -56 NC_001978.2 + 26789 0.68 0.436191
Target:  5'- aGgGCAACGG-CGGggGCAUu--CCCAa -3'
miRNA:   3'- -CgUGUUGCCgGCCuuCGUGuucGGGU- -5'
8091 3' -56 NC_001978.2 + 1843 0.68 0.456219
Target:  5'- aCACAGCGGCaGGGuu--CAAGCCCu -3'
miRNA:   3'- cGUGUUGCCGgCCUucguGUUCGGGu -5'
8091 3' -56 NC_001978.2 + 32991 0.68 0.456219
Target:  5'- cGUACGAC-GCUGGGgugaAGCuucuuCGAGCCCGg -3'
miRNA:   3'- -CGUGUUGcCGGCCU----UCGu----GUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 20681 0.68 0.456219
Target:  5'- cGUugAGCGGCaGGggGCGCAcaacuCCCu -3'
miRNA:   3'- -CGugUUGCCGgCCuuCGUGUuc---GGGu -5'
8091 3' -56 NC_001978.2 + 37415 0.68 0.466417
Target:  5'- gGCACuGACcGCCGGAGuGCGCuccGCCUAc -3'
miRNA:   3'- -CGUG-UUGcCGGCCUU-CGUGuu-CGGGU- -5'
8091 3' -56 NC_001978.2 + 13222 0.68 0.476732
Target:  5'- cCACAA-GGCCGGAAcGCcCAGGCUgAa -3'
miRNA:   3'- cGUGUUgCCGGCCUU-CGuGUUCGGgU- -5'
8091 3' -56 NC_001978.2 + 28084 0.68 0.476732
Target:  5'- -aACGGCGGucuuCCGGucGCugGGGCUCAc -3'
miRNA:   3'- cgUGUUGCC----GGCCuuCGugUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 18822 0.67 0.491359
Target:  5'- cGCGCGGCGuuccccgcuaucgacGCUGcGGAGCGCcuGAGCCUg -3'
miRNA:   3'- -CGUGUUGC---------------CGGC-CUUCGUG--UUCGGGu -5'
8091 3' -56 NC_001978.2 + 14281 0.67 0.497691
Target:  5'- -gACAA-GGCCGGucacguuCGCGAGCCCGc -3'
miRNA:   3'- cgUGUUgCCGGCCuuc----GUGUUCGGGU- -5'
8091 3' -56 NC_001978.2 + 7168 0.67 0.497691
Target:  5'- uGCAUAcCGGcCCGGAAGCcgACAgacucaaucGGCUCGa -3'
miRNA:   3'- -CGUGUuGCC-GGCCUUCG--UGU---------UCGGGU- -5'
8091 3' -56 NC_001978.2 + 28292 0.67 0.508325
Target:  5'- -aGCGuCGGCCGGAuGCuCAGGCgCGc -3'
miRNA:   3'- cgUGUuGCCGGCCUuCGuGUUCGgGU- -5'
8091 3' -56 NC_001978.2 + 21468 0.67 0.508325
Target:  5'- gGCACAGCGGCaggcuucccgguCGGggGCuCGAcUCCGc -3'
miRNA:   3'- -CGUGUUGCCG------------GCCuuCGuGUUcGGGU- -5'
8091 3' -56 NC_001978.2 + 19813 0.67 0.508325
Target:  5'- gGCACcAUGGCCacgaaGAAGCugAAGCUgAa -3'
miRNA:   3'- -CGUGuUGCCGGc----CUUCGugUUCGGgU- -5'
8091 3' -56 NC_001978.2 + 20206 0.67 0.515826
Target:  5'- gGCACGucgacaacaucaagACGGCCGaGAcGGUugAGGCCg- -3'
miRNA:   3'- -CGUGU--------------UGCCGGC-CU-UCGugUUCGGgu -5'
8091 3' -56 NC_001978.2 + 39429 0.67 0.519054
Target:  5'- gGUugGACGGCaGGggGCGCGgcaaggGGCUUu -3'
miRNA:   3'- -CGugUUGCCGgCCuuCGUGU------UCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.