Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8091 | 3' | -56 | NC_001978.2 | + | 27311 | 0.67 | 0.529871 |
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Target: 5'- cCGCGAUuggugugaGGCUGaGggGCugAAGUCCAc -3' miRNA: 3'- cGUGUUG--------CCGGC-CuuCGugUUCGGGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 2898 | 0.67 | 0.529871 |
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Target: 5'- uGCACucuuCGGgCGGggGCACu--CCCc -3' miRNA: 3'- -CGUGuu--GCCgGCCuuCGUGuucGGGu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 33414 | 0.66 | 0.551742 |
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Target: 5'- aCugAACGGCgGGuacGGCuACGGGCCgAa -3' miRNA: 3'- cGugUUGCCGgCCu--UCG-UGUUCGGgU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 23962 | 0.66 | 0.551742 |
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Target: 5'- aGCGCGACGGgcuuCCGGcGGGUACu-GCCaCAg -3' miRNA: 3'- -CGUGUUGCC----GGCC-UUCGUGuuCGG-GU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 29748 | 0.66 | 0.562781 |
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Target: 5'- aGCACGACGGaCCGGAAcugauCACcc-CCCGu -3' miRNA: 3'- -CGUGUUGCC-GGCCUUc----GUGuucGGGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 2101 | 0.66 | 0.573879 |
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Target: 5'- -gGCAGCGGCacaGcGAAGCACugAAGCUa- -3' miRNA: 3'- cgUGUUGCCGg--C-CUUCGUG--UUCGGgu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 22911 | 0.66 | 0.573879 |
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Target: 5'- cGCGCGAcuagggucCGGCCGGAccaauccCACAccugAGCCCc -3' miRNA: 3'- -CGUGUU--------GCCGGCCUuc-----GUGU----UCGGGu -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 24998 | 0.66 | 0.573879 |
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Target: 5'- uGCACuucGCGcacGCCGGAAGCAUGuuguGCgCAg -3' miRNA: 3'- -CGUGu--UGC---CGGCCUUCGUGUu---CGgGU- -5' |
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| 8091 | 3' | -56 | NC_001978.2 | + | 1984 | 0.66 | 0.595095 |
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Target: 5'- cGCACAguGCGGCaaaGGGuccgucgGGguCGGGUCCGg -3' miRNA: 3'- -CGUGU--UGCCGg--CCU-------UCguGUUCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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